GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:11:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arachis hypogaea DNA, clone: AHGS40N18.
DH961631.1:70-90
GGTTCTCACCCCCTACAACTTTTATCTTTT70CAGGAATCGAATGAAGAAGCATACGAAGAGTTTAATTGCATTTTGCTTATA
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:132712182-132712202
AGGTTCTCACCCCCTACAGCTTTACCTTTT132712182CAGGAATCGAATGAAGAAGCATTATAAAGAGTTATACTGCGTTTTCGTTTA
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:117916725-117916745
GGTTCTCACCCCCCTACGGCTTTACCTTTT117916725CAGGAATCGAATGAAGAAGCATTAAGAAGAGTTATACTGTGTTTGATTTAT
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:117301813-117301833
AGGTTCTCACCCCCCTACGGCTTTACCTTT117301813CAGGAATCGAATGAAGAAGCATTAAGAAGAGTTATACTGTGTTTGATTTAT
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:22183912-22183932
TAAACCAAAACGCAGTATAACTCTTCATAA22183912TGCTTCTTCATTCGATTCCTGAAAAGGTTAACCTGTAGGGGGTGAGAACCT
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:76958365-76958385
TATAAGCAAAATGCAATTAAACTCTTCGTA76958365TGCTTCTTCATTCGATTCCTGAAAAGATAAAAGTTGTAGGGGGTGAGAACC
Arachis hypogaea cultivar Shitouqi chromosome B04.
CP030996.1:120651354-120651374
TAAAACTAAACGGAGTTTAACTCTTCTTAA120651354TGCTTCTTCATTCGATTCCTGAAAAGGTAAAGCTGTAGCGGGTGAGAACCT
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:22932746-22932766
TAAACCAAAACGCAGTATAACTCTTCATAA22932746TGCTTCTTCATTCGATTCCTGAAAAGGTTAACCTGTAGGGGGTGAGAACCT
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:96249804-96249824
TATAAGCAAAATGCAATTAAACTCTTCGTA96249804TGCTTCTTCATTCGATTCCTGAAAAGATAAAAGTTGTAGGGGGTGAGAACC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:133165866-133165886
TAAAACTAAACGGAGTTTAACTCTTCTTAA133165866TGCTTCTTCATTCGATTCCTGAAAAGGTAAAGCTGTAGCGGGTGAGAACCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGAATCGAATGAAGAAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGAATCGAATGAAGAAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGAATCGAATGAAGAAGCA&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTTCTTCATTCGATTCCTG&k=0&no_gap=0&offset=0&limit=46
0.147 | 0.004 | cgi_end;

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