GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:55:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ia74h03.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ia74h03 5', genomic survey sequence.
BZ316660.1:523-542
AACTATGAATGTGTGACCAAAGAAATTATA523CAGGACAGGTCTCCTTTTTTGACAGCTAAATTTAGTTCTCCTTTTTTACA
Brassica napus gln gene for plastid glutamine synthetase, exons 1-12.
AJ271909.1:3343-3362
ACATCAGTGGTACTAATGGTGAAGTTATGC3343CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:13409238-13409257
ACATCAGTGGTACTAATGGTGAAGTTATGC13409238CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:7783099-7783118
ACATCAGTGGTACTAATGGTGAAGTTATGC7783099CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome, scaffold: A04.
LR031576.1:7060009-7060028
ACATCAGTGGTACTAATGGTGAAGTTATGC7060009CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:7303726-7303745
ACATCAGTGGTACTAATGGTGAAGTTATGC7303726CAGGACAGGTCTCCTTTTTTCCTCAATGAAGCTTCTGTTAATAAATTATT
KBrB131D06F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB131D06, genomic survey sequence.
ED537836.1:781-800
AATAATTTATTAACAGAAGCTTCATTGAGG781AAAAAAGGAGACCTGTCCTGGCATAACTTCACCATTAGTACCACTGATGT
Asterias rubens genome assembly, chromosome: 9.
LR699100.1:11376153-11376172
GAGATCATTTAAAATAACCCTTTTTCAAAA11376153AAAAAAGGAGACCTGTCCTGTAAAAAGGAAGCGGGCGGGCAGGGACGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGACAGGTCTCCTTTTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGACAGGTCTCCTTTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.137 | 0.128 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGACAGGTCTCCTTTTTT&k=0&no_gap=0&offset=0&limit=50
0.199 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAAAGGAGACCTGTCCTG&k=0&no_gap=0&offset=0&limit=44
0.201 | 0.001 | cgi_end;

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