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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 20:59:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Chionomys nivalis genome assembly, chromosome: 4.
OX465452.1:104126876-104126895
AAAAGAGAAGCCGAGAGCAATGGGGGATGG104126876CAGGAGGAGAAGATTGCCTGAGCCTGCTTCGCTTACTGCTTTAACCCTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2927.
FX658030.1:1413-1432
CTTCAGCTACTCTCACCTCAAGAGGAGGAG1413CAGGAGGAGAAGATTGCCTGGCGTGGTCCGCTGTCAGGGGAGTAGGGTTA
TSA: Raphanus sativus RS20515 mRNA sequence.
JT805062.1:1394-1413
CTTCAGCTACTCTCACCTCAAGAGGAGGAG1394CAGGAGGAGAAGATTGCCTGGCGTGGTCCGCTGTCAGGGGAGTAGGGTTA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:437978-437997
CAGCTACTCTCACCTCAAGAGGAGGAGGAG437978CAGGAGGAGAAGATTGCCTGGCTTGGTCAGGAGGGTTAGAGATCACACCA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:330380-330399
CAGCTACTCTCACCTCAAGAGGAGGAGGAG330380CAGGAGGAGAAGATTGCCTGGCTTGGTCAGGAGGGTTAGAGATCACACCA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:482048-482067
TCACTTCAGCTACTCTCACCTCAAGAGGAG482048CAGGAGGAGAAGATTGCCTGGCGTGGTGGTCCGCCAGGGGAGGGGGAGGA
Brassica rapa genome, scaffold: A02.
LR031573.1:355332-355351
CAGCTACTCTCACCTCAAGAGGAGGAGGAG355332CAGGAGGAGAAGATTGCCTGGCTTGGTCAGGAGGGTTAGAGATCACACCA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:766651-766670
TCACTTCAGCTACTCTCACCTCAAGAGGAG766651CAGGAGGAGAAGATTGCCTGGCGTGGTGGTCCGCCAGGGGAGGGGGAGGA
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:365373-365392
CAGCTACTCTCACCTCAAGAGGAGGAGGAG365373CAGGAGGAGAAGATTGCCTGGCTTGGTCAGGAGGGTTAGAGATCACACCA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:29495966-29495985
CTTCAGCTACTCTCACCTCAAGAGGAGGAG29495966CAGGAGGAGAAGATTGCCTGGCGTGGTCCGCTGTCAGGGGAGTAGGGTTA
Sequence 178583 from Patent EP2090662.
HB829369.1:336-355
TCCTCCCCCTCCCCTGGCGGACCACCACGC336CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
BN15.022H12F020212 BN15 Brassica napus cDNA clone BN15022H12, mRNA sequence.
CD814236.1:197-216
TGGTGTGATCTCTAACCCTCCTGACCAAGC197CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
Brassica oleracea var. viridis mRNA, clone: KALE-063G03, 5' end sequence.
DK479778.1:358-377
TCCTCCCCCTCCCCTGGCGGACCACCACGC358CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
Brassica oleracea var. viridis mRNA, clone: KALE-086F24, 5' end sequence.
DK488578.1:433-452
TCCTCCCCCTCCCCTGGCGGACCACCACGC433CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
Brassica oleracea var. viridis mRNA, clone: KALE-088N17, 5' end sequence.
DK489527.1:366-385
TCCTCCCCCTCCCCTGGCGGACCACCACGC366CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
Brassica oleracea var. viridis mRNA, clone: KALE-102B13, 5' end sequence.
DK494598.1:325-344
TCCTCCCCCTCCCCTGGCGGACCACCACGC325CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
ca120 Brassica napus lambda ZAP II library Brassica napus var. napus cDNA clone ca120, mRNA sequence.
DR697833.1:292-311
TCCTCCCCCTCCCCTGGCGGACCACCACGC292CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
23FGYLD_UP_001_D04_01FEB2004_026 Brassica napus 23FGYLD Brassica napus cDNA 5', mRNA sequence.
DY030408.1:387-406
TCCTCCCCCTCCCCTGGCGGACCACCACGC387CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
57ACPE6_UP_025_A06_20SEP2004_048 Brassica napus DH12075 Brassica napus cDNA 5', mRNA sequence.
EE416503.1:278-297
TGGTGTGATCTCTAACCCTCCTGACCAAGC278CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
59ACAB6_UP_029_G08_27JUL2004_052 Brassica napus 59ACAB6 Brassica napus cDNA 5', mRNA sequence.
EE422079.1:138-157
TGGTGTGATCTCTAACCCTCCTGACCAAGC138CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
76ETGS72_UP_013_A08_21MAY2005_064 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE450376.1:354-373
TCCTCCCCCTCCCCTGGCGGACCACCACGC354CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
BNSCS3CT_UP_036_F05_12JAN2005_037 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE467745.1:404-423
TGGTGTGATCTCTAACCCTCCTGACCAAGC404CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
OL5275R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5275, mRNA sequence.
EH421997.1:261-280
TCCTCCCCCTCCCCTGGCGGACCACCACGC261CAGGCAATCTTCTCCTCCTGCTCCTCTTGAGGTGAGAGTAGCTGAAGTGA
39RDBRT_UP_090_E06_25JAN2006_040 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
ES937006.1:367-386
TGGTGTGATCTCTAACCCTCCTGACCAAGC367CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
0126566 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV121254.1:230-249
TGGTGTGATCTCTAACCCTCCTGACCAAGC230CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
0090656 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193173.1:391-410
TGGTGTGATCTCTAACCCTCCTGACCAAGC391CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
BR093421 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-010G05 5', mRNA sequence.
EX107131.1:399-418
TGGTGTGATCTCTAACCCTCCTGACCAAGC399CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
RS1EL50TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD561198.1:4-23
GGC4CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGGGGTGAGAGTAGCTGAAG
BN18DYSC_UP_046_D12_20FEB2008_090 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG556926.1:210-229
TGGTGTGATCTCTAACCCTCCTGACCAAGC210CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
Raphanus sativus mRNA, clone: RSCL08F24, 5' end sequence.
FY435646.1:359-378
TAACCCTACTCCCCTGACAGCGGACCACGC359CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
Raphanus sativus mRNA, clone: RSCS02O13, 5' end sequence.
FY446852.1:62-81
TAACCCTACTCCCCTGACAGCGGACCACGC62CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
Raphanus sativus mRNA, clone: RSCS16H19, 5' end sequence.
FY451606.1:397-416
TAACCCTACTCCCCTGACAGCGGACCACGC397CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
Raphanus sativus mRNA, clone: RSCS22M23, 5' end sequence.
FY453875.1:46-65
TAACCCTACTCCCCTGACAGCGGACCACGC46CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3126.
FX697872.1:1243-1262
TGGTGTGATCTCTAACCCTCCTGACCAAGC1243CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1852.
FX791730.1:463-482
TAACCCTACTCCCCTGACAGCGGACCACGC463CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
KBrH131H15 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT021197.1:286-305
TGGTGTGATCTCTAACCCTCCTGACCAAGC286CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB041F23, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC190052.2:67946-67965
TGGTGTGATCTCTAACCCTCCTGACCAAGC67946CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS009G14, complete sequence.
AC189646.2:2888-2907
TGGTGTGATCTCTAACCCTCCTGACCAAGC2888CAGGCAATCTTCTCCTCCTGCTCCTCCTCCTCTTGAGGTGAGAGTAGCTG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:14122170-14122189
TAACCCTACTCCCCTGACAGCGGACCACGC14122170CAGGCAATCTTCTCCTCCTGCTCCTCCTCTTGAGGTGAGAGTAGCTGAAG
Rhodothermaceae bacterium RA chromosome, complete genome.
CP020382.1:675367-675386
TCCGGCGTCTCGCGGGCCGACCCCTGGTAT675367CAGGCAATCTTCTCCTCCTGGCGTTCCATCGACGTGCGCACGAACGCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGGAGGAGAAGATTGCCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGAGGAGAAGATTGCCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.231 | 0.222 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGAGGAGAAGATTGCCTG&k=0&no_gap=0&offset=0&limit=50
1.751 | 1.520 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGCAATCTTCTCCTCCTG&k=0&no_gap=0&offset=0&limit=40
1.770 | 0.020 | cgi_end;

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