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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 12:06:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7096496-7096515
TTTATTTCTGCCATGGGGCAGCTCCCTTCG7096496CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:7362704-7362723
TTTATTTCTGCCATGGGGCAGCTCCCTTCG7362704CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6782530-6782549
TTTATTTCTGCCATGGGGCAGCTCCCTTCG6782530CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7260384-7260403
TTTATTTCTGCCATGGGGCAGCTCCCTTCG7260384CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7089579-7089598
TTTATTTCTGCCATGGGGCAGCTCCCTTCG7089579CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7469589-7469608
TTTATTTCTGCAATGGGACAGCTCCCTTCG7469589CAGGATATTTTGGCGCTGCTCGAGTTTAAGAAGGGTGTCAAGCATGACCC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5761980-5761999
TTTATTTCTGCCATGGGGCAGCTCCCTTCG5761980CAGGATATTTTGGCGCTGCTCGAGTTCAAGAAGGGTGTCAAGCATGACCC
Piscirickettsia salmonis strain SR1 plasmid unnamed2, complete sequence.
CP039229.1:159651-159670
CTAAAGGAATAATCTTATAGTTTTTACTAC159651CAGGATATTTTGGCGCTGCTCCACCACCAAAAGATAACGAGTAATTCCAA
Piscirickettsia salmonis strain BI1 plasmid unnamed2, complete sequence.
CP039236.1:148568-148587
CTAAAGGAATAATCTTATAGTTTTTACTAC148568CAGGATATTTTGGCGCTGCTCCACCACCAAAAGATAACGAGTAATTCCAA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:36020004-36020023
GGATCATGCTTGATACCCTTCTTGAACTCC36020004AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:36856413-36856432
GGATCATGCTTGATACCCTTCTTGAACTCC36856413AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:36878244-36878263
GAATCATGCTTGATACCCTTCTTGAACTCC36878244AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:34392485-34392504
GGATCATGCTTGATACCCCTCTTGAACTCC34392485AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:35061367-35061386
GGATCATGCTTGATACCCTTCTTGAACTCC35061367AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39447587-39447606
GGGTCATGCTTGACACCCTTCTTGAACTCG39447587AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:37162670-37162689
GGATCATGCTTGATACCCTTCTTGAACTCC37162670AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36188587-36188606
GGGTCATGCTTGACACCCTTCTTGAACTCG36188587AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATATA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:33380153-33380172
GGATCATGCTTGATACCCTTCTTGAACTCC33380153AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39752988-39753007
GGGTCATGCTTGACACCCTTCTTGAACTCG39752988AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:36096077-36096096
GGATCATGCTTGATACCCTTCTTGAACTCC36096077AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39079314-39079333
GGGTCATGCTTGACACCCTTCTTGAACTCG39079314AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:36537215-36537234
GGATCATGCTTGATACCCTTCTTGAACTCC36537215AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:38635119-38635138
GGGTCATGCTTGACACCCTTCTTGAACTCG38635119AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:36110195-36110214
GGATCATGCTTGATACCCTTCTTGAACTCC36110195AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39092858-39092877
GGGTCATGCTTGACACCCTTCTTGAACTCG39092858AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:37212498-37212517
GGATCATGCTTGATACCCTTCTTGAACTCC37212498AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39901991-39902010
GGGTCATGCTTGACACCCTTCTTGAACTCG39901991AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:36057613-36057632
GGATCATGCTTGATACCCTTCTTGAACTCC36057613AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:34729526-34729545
GGATCATGCTTGATACCCTTCTTGAACTCC34729526AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:34717091-34717110
GGATCATGCTTGATACCCTTCTTGAACTCG34717091AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:24914799-24914818
GGATCATGCTTGATACCCTTCTTGAACTCC24914799AGCAGCGCCAAAATATCCTGCGAAGGGAGCTGCCCCATGGCAGAAATAAA
Piscirickettsia salmonis strain MR5 plasmid unnamed2, complete sequence.
CP039242.1:115630-115649
TTGGAATTACTCGTTATCTTTTGGTGGTGG115630AGCAGCGCCAAAATATCCTGGTAGTAAAAACTATAAGATTATTCCTTTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGGATATTTTGGCGCTGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGATATTTTGGCGCTGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.301 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGATATTTTGGCGCTGCT&k=0&no_gap=0&offset=0&limit=50
0.418 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=AGCAGCGCCAAAATATCCTG&k=0&no_gap=0&offset=0&limit=41
0.433 | 0.015 | cgi_end;

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