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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 16:55:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gallus gallus breed Huxu chromosome Z.
CP100594.1:4095611-4095630
TTGCTGGGACCAAGGGACACACAGTCCTAC4095611CAGGCTCCTGTCTGTTTGAGAAGCTTCTGGAGATCACTAGCCAATTCCCA
Bufo bufo genome assembly, chromosome: 9.
LR991675.1:134030352-134030371
CAGGGGGAAAAGGAGAGAGGCCGATCACTG134030352CAGGCTCCTGTCTGTTTGAGGACGCATGATCGCTGTATAAAGGACGCCGC
UCRPT01_0005L08_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005L08, mRNA sequence.
CV704647.1:258-277
AACAGAAATTAGGGTTATTGGTGGACCGCC258CAGGCTCCTGTCTGTTTGAGTATTCTTCTAATTCCATATCTTGAAAAGCA
UCRCS09_31D04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-31D04-H8-1-4.b, mRNA sequence.
CX050259.1:211-230
AACAGAAATTAGGGTTGTTGGTGGACCGCC211CAGGCTCCTGTCTGTTTGAGTATTCTTCTAATTCCATATCTTGAAAAGCA
Acomys percivali genome assembly, chromosome: 10.
OU015751.1:80453118-80453137
GTTCAGCACCAAAGGAAGTCAGGACAGGAA80453118CTCAAACAGACAGGAGCCTGGAGGCAGTAGCTGATGCAGAGGCCATGGAG
Gallus gallus BAC clone CH261-30P24 from chromosome z, complete sequence.
AC192001.3:65850-65869
TGGGAATTGGCTAGTGATCTCCAGAAGCTT65850CTCAAACAGACAGGAGCCTGGTAGGACTGTGTGTCCCTTGGTCCCAGCAA
Myripristis murdjan genome assembly, chromosome: 2.
LR597551.1:18861021-18861040
TGTTTTACTTTTACATTTCCGCTCTTATTA18861021CTCAAACAGACAGGAGCCTGAGCTCATCCTTTGAAATTACAAGCAGCCAG
Sequence 1614 from patent US 9551006.
KH514184.1:2450-2469
TGCTTTTCAAGATATGGAATTAGAAGAATA2450CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCTAATTTCTGTT
Sequence 1614 from patent US 10457952.
MO457360.1:2450-2469
TGCTTTTCAAGATATGGAATTAGAAGAATA2450CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCTAATTTCTGTT
UCRCS09_31D04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-31D04-H8-1-5.g, mRNA sequence.
CX050260.1:229-248
TGCTTTTCAAGATATGGAATTAGAAGAATA229CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCTAATTTCTGTT
C06011A04SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06011A04, mRNA sequence.
CX298325.1:166-185
TGCTTTTCAAGATATGGAATTAGAAGAATA166CTCAAACAGACAGGAGCCTGGGCGGTCCACCAATAACCCTAATTTCTGTT
Citrus unshiu mRNA, clone: MAPGL06, 3'-end sequence, expressed in albedo.
DC893331.1:192-211
TGCTTTTCAAGATATGGAATTAGAAGAATA192CTCAAACAGACAGGAGCCTGGGCNGTCCACCAATAACCCTAATTTCTGTT
CS00-C3-701-025-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY703723.1:563-582
TGCTTTTCAAGATATGGAATTAGAAGAATA563CTCAAACAGACAGGAGCCTGNGCGGTCCACCAACAACCCTAATTTCTGTT
CS00-C3-704-095-H06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY734516.1:83-102
TGCTTTTCAAGATATGGAATTAGAAGAATA83CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCTAATTTCTGTT
CR05-C1-103-027-G03-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY776942.1:42-61
GTGCTTTTCCGATATGGAATTAGAAGAATA42CTCAAACAGACAGGAGCCTGGGCGGTCCACCAATAACCCTAATTTCTGTT
QM0AAA12AB02FM1 CCL1 Citrus clementina genomic clone CCL015C03, genomic survey sequence.
ET088098.1:100-119
TGCTTTTCAAGATATGGAATTATAAGAATA100CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCGAATTTCTGTT
QM0AAA12DB02FM1 CCL1 Citrus clementina genomic clone CCL015D04, genomic survey sequence.
ET088596.1:136-155
TGCTTTTCAAGATATGGAATTAGAAGAATA136CTCAAACAGACAGGAGCCTGGGCGGTCCACCAACAACCCTAATTTCTGTT

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