GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:48:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scyliorhinus canicula genome assembly, chromosome: 7.
LR744036.1:141176913-141176932
AGAGTAGCTAAAGGTCCTTTGCAGCAGAGA141176913CAGGGGATTTTATCATGGGGAATGAGGAAATGGTGGAGGCATTGAACAAA
Lotus japonicus genomic DNA, chromosome 5, clone: LjT31L14, TM0366.
AP006667.1:89404-89423
AATCATAAATTATGATAAAATGCATAAAGG89404CAGGGGATTTTATCATGGGGGACAAAAATCTGATTTTGTAGGAAGATTGT
Lotus japonicus genomic DNA, chromosome 5, clone: LjB21O22, BM1451.
AP008090.2:91544-91563
ACAATCTTCCTACAAAATCAGATTTTTGTC91544CCCCATGATAAAATCCCCTGCCTTTATGCATTTTATCATAATTTATGATT
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:64640705-64640724
ACAATCTTCCTACAAAATCAGATTTTTGTC64640705CCCCATGATAAAATCCCCTGCCTTTATGCATTTTATCATAATTTATGATT
Brachyptera putata genome assembly, chromosome: 14.
OU015475.1:9911662-9911681
AGACATACACCAGCACCAATTACGAATAAC9911662CCCCATGATAAAATCCCCTGCATAAAAGCACATCATTGTTCTTGATTGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGGGGATTTTATCATGGGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGGGATTTTATCATGGGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGGGATTTTATCATGGGG&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=CCCCATGATAAAATCCCCTG&k=0&no_gap=0&offset=0&limit=48
0.134 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).