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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:27:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:42307871-42307890
TGGAAGCCAATCAACATCTGTAGGTGTGAT42307871CAGGTACTCCAAGTCATTGCAACTTTTAATGCTAAGTCTTCTTATGTTCC
Hygrocybe coccinea genome assembly, chromosome: 3.
OY741990.2:53514-53533
GCTGTGATGTAGGTGATCATCACTTTGGTA53514CAGGTACTCCAAGTCATTGCTGTGATATAGATACTCGTCGCTTTGGTGTA
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:6061873-6061892
CCAGTCATTTTCAACATCTGTGGGTGTGAC6061873CAGGTACTCCAAGTCATTGCAACTTTTAATGCTAAGTCTTCTCAAGGTTC
Brassica oleracea isolate B265 ABI1 protein (ABI1) gene, partial cds; RPS2 protein (RPS2) and N-myristoyl transferase (N-MYR) genes, complete cds; and CK1a protein (CK1a) gene, partial cds.
AF180355.1:7180-7199
GGAACATAAGAAGACTTAGCATTAAAAGTT7180GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica oleracea isolate B117 RPS2 gene, partial sequence.
AF180357.1:2120-2139
GGAACATAAGAAGACTTAGCATTAAAAGTT2120GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica montana RPS2 gene, partial sequence.
AF180358.1:2120-2139
GGAACATAAGAAGACTTAGCATTAAAAGTT2120GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica rapa RPS2 gene, partial sequence.
AF180359.1:2120-2139
GGAACATAAGAAGACTTAGCATTAAAAGTT2120GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:8854080-8854099
GGAACATAAGAAGACTTAGCATTAAAAGTT8854080GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:9024353-9024372
GGAACATAAGAAGACTTAGCATTAAAAGTT9024353GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:14322041-14322060
GGAACATAAGAAGACTTAGCATTAAAAGTT14322041GCAATGACTTGGAGTACCTGATCACACCTACAGATGCTGATTGGCTTCCA
Brassica rapa genome, scaffold: A01.
LR031571.1:8913122-8913141
GGAACATAAGAAGACTTAGCATTAAAAGTT8913122GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:14285494-14285513
GGAACATAAGAAGACTTAGCATTAAAAGTT14285494GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8937187-8937206
GGAACATAAGAAGACTTAGCATTAAAAGTT8937187GCAATGACTTGGAGTACCTGATCACACCTACAGATGTTGATTGGCTTCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGGTACTCCAAGTCATTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGTACTCCAAGTCATTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGTACTCCAAGTCATTGC&k=0&no_gap=0&offset=0&limit=50
0.144 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=GCAATGACTTGGAGTACCTG&k=0&no_gap=0&offset=0&limit=47
0.150 | 0.007 | cgi_end;

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