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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:09:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrH121C04 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT013275.1:338-356
AAGAAAACATTAGCTCCTCGACATGTCAAA338CAGTCAAATTTACCGCCTTACCATCTTGCTAGTAGCCATAATTTGGCGT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:37004356-37004374
ATGAAAACACTAGCTCCTCGACATGTCAAA37004356CAGTCAAATTTACCGCCTTACCATCTTGCTAGTAGCCATAATTTGGCGT
Tetradesmus obliquus strain DOE0152z chromosome 11a.
CP126201.1:2599284-2599302
TTTCGGCACAAACTTTCAGCACTGAAATTG2599284CAGTCAAATTTACCGCCTTATAGTAAATGTATGTGTATCCCAGCAACTG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:31511054-31511072
AAGAAAACATTAGCTCCTCGACATGTCAAA31511054CAGTCAAATTTACCGCCTTACCATCTTGCTAGTAGCCATAATTTGGCGT
Brassica rapa genome, scaffold: A02.
LR031573.1:29712911-29712929
AAGAAAACATTAGCTCCTCGACATGTCAAA29712911CAGTCAAATTTACCGCCTTACCATCTTGCTAGTAGCCATAATTTGGCGT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:30644496-30644514
AAGAAAACATTAGCTCCTCGACATGTCAAA30644496CAGTCAAATTTACCGCCTTACCATCTTGCTAGTAGCCATAATTTGGCGT
Harpalus rufipes genome assembly, chromosome: 1.
OX596274.1:88906243-88906261
AGAGTGGTAGAATCGTGGAGTATCCCAGAA88906243CAGTCAAATTTACCGCCTTTGCCTACTGTTCAAAATGTTTTTTCTGCTC
Brassica rapa subsp. pekinensis methylthioalkylmalate synthase (MAM3-2) gene, partial cds.
FJ376041.1:657-675
ACGCCAAATTATGGCTACTAGCAAGATGGT657AAGGCGGTAAATTTGACTGTTTGACATGTCGAGGAGCTAATGTTTTCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGTCAAATTTACCGCCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTCAAATTTACCGCCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.274 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTCAAATTTACCGCCTT&k=0&no_gap=0&offset=0&limit=50
0.346 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=AAGGCGGTAAATTTGACTG&k=0&no_gap=0&offset=0&limit=43
0.347 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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