GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:24:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GR__Eb018F11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb018F11 3', mRNA sequence.
CO116195.1:397-416
AAATGATGTGTAAGGAGCTTGGTGATGGAT397CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
G708P531RH1.T0 Acorn worm normalized gastrula pExpress1 library Saccoglossus kowalevskii cDNA 5' end, mRNA sequence.
FF495229.1:41-60
CCGATGCTGTATCTTTTGATGTTGACAGTA41CAGTGACCATTGATGAAGGAATAGATGAGCTAGCTGCATATCTTGGCAAA
G709P554RB7.T0 Acorn worm normalized neurula pExpress1 library Saccoglossus kowalevskii cDNA 5' end, mRNA sequence.
FF512301.1:92-111
CCGATGCTGTATGTTTTGATGTTGACAGTA92CAGTGACCATTGATGAAGGAATAGATGAGCTAGCTGCATATCTTGGCAAA
G825P5143RD8.T0 Acorn worm normalized gastrula pExpress1 library Saccoglossus kowalevskii cDNA 5' end, mRNA sequence.
FF608927.1:40-59
CCGATGCTGTATGTTTTGATGTTGACAGTA40CAGTGACCATTGATGAAGGAATAGATGAGCTAGCTGCATATCTTGGCAAA
G826P5377RG9.T0 Acorn worm normalized juvenile pExpress1 library Saccoglossus kowalevskii cDNA 5' end, mRNA sequence.
FF669140.1:136-155
CCGATGCTGTATGTTTTGATGTTGACAGTA136CAGTGACCATTGATGAAGGAATAGATGAGCTAGCTGCATATCTTGGCAAA
G826P5402RF2.T0 Acorn worm normalized juvenile pExpress1 library Saccoglossus kowalevskii cDNA 5' end, mRNA sequence.
FF673411.1:107-126
CCGATGCTGTATGTTTTGATGTTGACAGTA107CAGTGACCATTGATGAAGGAATAGATGAGCTAGCTGCATATCTTGGCAAA
ndcxb0_0002_G11.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ371399.1:291-310
AAATGATGTGTAAGGAGCTTGGTGATGGAT291CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
ndcxb0_0024_C05.ab1 Upland cotton seedling roots at salt stress 3h (ndcxb) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ372929.1:293-312
AAATGATGTGTAAGGAGCTTGGTGATGGAT293CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:1592215-1592234
AAATGATGTGTAAGGAGCTTGGTGATGGAT1592215CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:1526181-1526200
AAATGATGTGTAAGGAGCTTGGTGATGGAT1526181CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:1828887-1828906
AAATGATGTGTAAGGAGCTTGGTGATGGAT1828887CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.
JQ837700.1:254-273
AAATGATGTGTAAGGAGCTTGGTGATGGAT254CAGTGACCATTGATGAAGGAAATGGAAAGGTAAACAAGGAAAACGATGGC
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:93123824-93123843
GCCATCGTTTTCCTTGTTTACCTTTCCATT93123824TCCTTCATCAATGGTCACTGATCCATCACCAAGCTCCTTACACATCATTT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:106128751-106128770
GCCATCGTTTTCCTTGTTTACCTTTCCATT106128751TCCTTCATCAATGGTCACTGATCCATCACCAAGCTCCTTACACATCATTT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:137643032-137643051
GCCATCGTTTTCCTTGTTTACCTTTCCATT137643032TCCTTCATCAATGGTCACTGATCCATCACCAAGCTCCTTACACATCATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGTGACCATTGATGAAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTGACCATTGATGAAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.690 | 0.681 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTGACCATTGATGAAGGA&k=0&no_gap=0&offset=0&limit=50
0.728 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTTCATCAATGGTCACTG&k=0&no_gap=0&offset=0&limit=38
0.730 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).