GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 11:54:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Thalassophryne amazonica genome assembly, chromosome: 1.
LR722966.1:168077887-168077906
TGTTGTCAGGTTTTCGCCTCACATGGACCA168077887CAGTGGAAATAAGTGTTTGTTTTATTGTCTCATCTGTGTATCACTGATAT
Thalassophryne amazonica genome assembly, chromosome: 2.
LR722967.1:21199736-21199755
TGTTGTCACGTTTTAGCCTCACATAGACCA21199736CAGTGGAAATAAGTGTTTGTTTTATTGTGTCATCCGTGTATCGTTGATAT
Thalassophryne amazonica genome assembly, chromosome: 3.
LR722968.1:113707944-113707963
TGTTGTCAAGTTTTAGCCTCACATGGACCA113707944CAGTGGAAATAAGTGTTTGTTTTATTGTGTCATCCTTGTATCATTGATAT
Thalassophryne amazonica genome assembly, chromosome: 6.
LR722971.1:8146620-8146639
TGTTGTCAAGTTTCAGCTTCACATGGACCA8146620CAGTGGAAATAAGTGTTTGTTTTATTGTGTCATCTGTGTATCATTGATAT
Squalius cephalus genome assembly, chromosome: 17.
OX439263.1:3053390-3053409
CACCCGAGTCTTTACTCTAGAACTGGGGAA3053390CAGTGGAAATAAGTGTTTGTTTTTGTTGTTTTTTTTTTGTGTGTGTTTTT
Colias croceus genome assembly, chromosome: 12.
HG991970.1:9529491-9529510
AACGTTATACCAGTGCAAAGATAAATTATT9529491CAGTGGAAATAAGTGTTTGTTAATAAAAAAGAAACTTACGAAAGTCACAA
Colias croceus genome assembly, chromosome: 27.
HG991985.1:4735550-4735569
AACGTTATACCAGTGCAAAGATAAATTATT4735550CAGTGGAAATAAGTGTTTGTTAATAAAAAAGAAACTTACGAAAGTCACAA
Thyatira batis genome assembly, chromosome: 14.
LR990499.1:8975525-8975544
CATCGTGTAGCGACTGTGCTGAGCTCTGTG8975525CAGTGGAAATAAGTGTTTGTGCAAGATCATTACCTATGGTGGAGAAGTAT
Polydrusus cervinus genome assembly, chromosome: 8.
OW284517.1:42835726-42835745
TTTTTTAGCTGAATATCGAAAAAAAATGTC42835726CAGTGGAAATAAGTGTTTGTCAAAAAAACAGAGAGGTAACAAACTTACCC
Thalassophryne amazonica genome assembly, chromosome: 4.
LR722969.1:26956439-26956458
TGACAGGAGACCACAAGATGACACAATGAA26956439ACAAACACTTATTTCCACTGTGGTCCATGTGAGGCTAAAACTTGACAATA
Thalassophryne amazonica genome assembly, chromosome: 4.
LR722969.1:26979080-26979099
TGACAGGAGACCACAAGATGACACAATGAA26979080ACAAACACTTATTTCCACTGTGGTCCATGTGAGGCTAAAACTTGACAATA
Thalassophryne amazonica genome assembly, chromosome: 5.
LR722970.1:15017754-15017773
GGTGAAAATATCAACAGATGACACAATAAA15017754ACAAACACTTATTTCCACTGTGGTCCATGTGAGGCTAAAACGTCACACTG
Schistosoma spindale genome assembly, chromosome: Z.
OX336416.1:17439078-17439097
ACACTAACACCTCAGACAGAGTGAGGACAT17439078ACAAACACTTATTTCCACTGTTCCATTCAAGCAGTGGGGTTAGGTAGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CAGTGGAAATAAGTGTTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTGGAAATAAGTGTTTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTGGAAATAAGTGTTTGT&k=0&no_gap=0&offset=0&limit=50
0.189 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAACACTTATTTCCACTG&k=0&no_gap=0&offset=0&limit=41
0.192 | 0.003 | cgi_end;

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