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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 17:58:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

3530_1_138_1_G06.x_1 3530 - Full length cDNA library created by Invitrogen from multiple tissues Zea mays cDNA, mRNA sequence.
CO520976.1:441-460
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT441CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
ZM_BFb0108M21.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DT647699.1:428-447
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT428CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
IV-1091-401D-C10.T7-1 UGIV-1091-Reseq Zea mays cDNA, mRNA sequence.
DV622486.1:401-420
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT401CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
ZM_BFb0244O22.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
DY234679.1:415-434
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT415CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
ZM_BFb0312K04.f ZM_BFb Zea mays cDNA 3', mRNA sequence.
EB403841.1:430-449
TGCGCGCGCGGCAGCTATCTCATTTGTCAT430CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
id55e12.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone id55e12 5', genomic survey sequence.
BZ422577.1:168-187
CAATGCAAAGCAATGCATGGGATTCCTCAT168CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCAGAGCCCTGCGACGA
ig97h12.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig97h12 5', genomic survey sequence.
BZ625373.1:364-383
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT364CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
OGBAR10TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0120A20, genomic survey sequence.
BZ710511.1:170-189
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT170CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
OG0BB73TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0677N02, genomic survey sequence.
CG238769.1:764-783
TCAGAGACAACGGCAGCTCCTGCTCATCAT764CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
OG1CP96TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0731P24, genomic survey sequence.
CG253138.1:150-169
TCAGAGACAACGGCAGCTCCTGCTCATCAT150CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
OG3DT17TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0784C10, genomic survey sequence.
CG345825.1:153-172
TCAGAGACAACGGCAGCTCCTGCTCATCAT153CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
OG0FC21TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0704C17, genomic survey sequence.
CG376661.1:389-408
TCAGAGACAACGGCAGCTCCTGCTCATCAT389CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
104_339_10781298_116_31372_162 Sorghum methylation-filtered library (LibID: 104) Sorghum bicolor genomic clone 10781298, genomic survey sequence.
CL154281.1:568-587
CAATGCAAAGCAATGCATGGGATTCCTCAT568CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCAGAGCCCTGCGACGA
ZMMBHp0005B09.f ZMMBHp Zea mays genomic clone ZMMBHp0005B09 5', genomic survey sequence.
ET000989.1:58-77
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT58CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
PV_ABa225G13.R PV_ABa Panicum virgatum genomic 3', genomic survey sequence.
HR395586.1:554-573
GCAATGCGCGGGCGGGCGGCGGCTCATCAT554CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCCGACCCCTGCGACGA
Zea mays cultivar B73 chromosome 2 clone CH201-483F6, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.
AC184833.3:122387-122406
TCAGAGACAACGGCAGCTCCTGCTCATCAT122387CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
Zea mays cultivar B73 chromosome 7 clone CH201-240N18, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC211154.5:32369-32388
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT32369CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
Triticum aestivum clone BAC-clone-WFZP-A, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.
KP276772.1:202328-202347
AGGCTAAGAGCAATGCCAGCGCGTCCGTTT202328CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCCGAGCCCTGCGA
Setaria viridis cultivar ME034v chromosome 2.
CP050796.1:47411669-47411688
GCAACGCAAACTACCCGGCGGCTCAGAATT47411669CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACCCCTGCGACGA
Cenchrus purpureus cultivar elephant grass chromosome A7.
CP053460.1:90135927-90135946
CAAACTAATTGATCTGGGCAGTCCAGAACT90135927CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACCCCTGCGACGA
Cenchrus purpureus cultivar elephant grass chromosome B7.
CP053467.1:134422423-134422442
TGCGCGCGCCCCCGCCGGCAGTTCAGAACT134422423CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACCCCTGCGACGA
Cenchrus purpureus cultivar elephant grass chromosome B7.
CP053467.1:134749829-134749848
TGCGCGCGCCCCCGCCGGCAGTTCAGAACT134749829CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACCCCTGCGACGA
Zea mays cultivar LT2357 chromosome 7.
CP116745.1:174656184-174656203
TGCGCGCGCGGCAGCTAGCTCATTCGTCAT174656184CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
Aegilops umbellulata cultivar TA1851 chromosome 2U.
CP136055.1:570280257-570280276
AGGCTAAGAGCAATGCCGGCGCGTCTGTTT570280257CAGTGGGAGAGGAAGCTGAAGGGTGAGTAGCCGTTGTCCGAGCCCTGCGA
Sorghum bicolor cultivar Hongyingzi chromosome 2.
CP137826.1:77515821-77515840
CAATGCAAAGCAATGCATGGGATTCCTCAT77515821CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCAGAGCCCTGCGACGA
Sorghum bicolor cultivar Huandiaonuo chromosome 2.
CP137836.1:75854353-75854372
CAATGCAAAGCAATGCATGGGATTCCTCAT75854353CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCAGAGCCCTGCGACGA
Paspalum notatum var. saurae isolate R1 chromosome 03.
CP144747.1:57220891-57220910
GTGCAGCTCGCGATCGACGACCCCATCGAT57220891CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGGCGTCCGACCCCTGCGACGA
Triticum aestivum genome assembly, chromosome: 2D.
LR862513.1:73443105-73443124
GAGCAATGCTGGCTGGTGCATTTGTTGTTT73443105CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR862513.1:76745600-76745619
GAGCAATGCTGGCTGGTGCATTTGTTGTTT76745600CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR862534.1:68564729-68564748
GAGCAATGCTGGCTGGTGCATTTGTTGTTT68564729CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR865463.1:67854284-67854303
GAGCAATGCTGGCTGGTGCATTTGTTGTTT67854284CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR865484.1:68844134-68844153
GAGCAATGCTGGCTGGTGCATTTGTTGTTT68844134CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR865744.1:71174025-71174044
GAGCAATGCTGGCTGGTGCATTTGTTGTTT71174025CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR877314.1:70156527-70156546
GAGCAATGCTGGCTGGTGCATTTGTTGTTT70156527CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LR878440.1:68470067-68470086
GAGCAATGCTGGCTGGTGCATTTGTTGTTT68470067CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Zea mays genome assembly, chromosome: 2.
LR897968.1:226052670-226052689
TCAGAGACAACGGCAGCTCCTGCTCATCAT226052670CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGAGCCCTGCGACGA
Zea mays genome assembly, chromosome: 7.
LR897973.1:180606058-180606077
TGCGCGCGCGGCAGCTAGCTCATTTGTCAT180606058CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCGTCGGACGACCCCTGCGA
Digitaria exilis genome assembly, chromosome: 2A.
LR994606.1:45966074-45966093
TACCAATGCGCGCGATCATCATCGATCGAT45966074CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCATCGGACCCCTGCGTGTC
Digitaria exilis genome assembly, chromosome: 2B.
LR994607.1:42170947-42170966
AGCAACTCGCGCGATCATCGATCGATCGAT42170947CAGTGGGAGAGGAAGCTGAAGGGCGAGTAGCCATCGGAGCCATGCGTGTC
Triticum aestivum genome assembly, chromosome: II.
LS480641.1:56637316-56637335
GAGCAATGCTGGCTGGTGCATTTGTTGTTT56637316CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
LS992085.1:67496012-67496031
GAGCAATGCTGGCTGGTGCATTTGTTGTTT67496012CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Triticum aestivum genome assembly, chromosome: 2D.
OU015726.1:73075840-73075859
GAGCAATGCTGGCTGGTGCATTTGTTGTTT73075840CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Avena insularis genome assembly, chromosome: 5D.
OU342349.1:427422768-427422787
CAATGCAGGCACATGGTCATGGATGCATTT427422768CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTGTCCGAGCCCTGCGA
Avena sativa genome assembly, chromosome: 6A.
OU342383.1:400481325-400481344
ATGCATTGCAGGTTCCACATGGATGCATTT400481325CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTATCCGAGCTCTGGGC
Avena sativa genome assembly, chromosome: 5D.
OU342396.1:434603849-434603868
CAATGCAGGCACATGGTCATGGATGCATTT434603849CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTGTCCGAGCCCTGCGA
Avena atlantica genome assembly, chromosome: 6A.
OU342738.1:378615974-378615993
ATGAATTGCAGGTTCCACATGGATGCATTT378615974CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTATCCGAGCTCTGGGC
Triticum aestivum genome assembly, chromosome: 2D.
OU343184.1:74910142-74910161
GAGCAATGCTGGCTGGTGCATTTGTTGTTT74910142CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGTTGTCGGAGCCCTGCGA
Avena sativa genome assembly, chromosome: 6.
OV702284.1:404136777-404136796
ATGCATTGCAGGTTCCACATGGATGCATTT404136777CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTATCCGAGCTCTGGGC
Avena sativa genome assembly, chromosome: 19.
OV702297.1:440301553-440301572
CAATGCAGGCACATGGTCATGGATGCATTT440301553CAGTGGGAGAGGAAGCTGAAGGGGGAGTAGCCGGTGTCCGAGCCCTGCGA
Hordeum vulgare genome assembly, chromosome: 2H.
OX460237.1:600258076-600258095
TGAGAGCAATGCCGGCCGGCGCGTCTGCTT600258076CAGTGGGAGAGGAAGCTGAAGGGTGAGTAGCCGTTGTCGGAGCCCTGCGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGTGGGAGAGGAAGCTGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTGGGAGAGGAAGCTGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.949 | 0.939 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTGGGAGAGGAAGCTGAA&k=0&no_gap=0&offset=0&limit=50
1.107 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=TTCAGCTTCCTCTCCCACTG&k=0&no_gap=0&offset=0&limit=0
1.107 | 0.000 | cgi_end;

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