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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 12:31:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 7070 from patent US 7365185.
EA628191.1:155-174
GCCGATTCGTTAAAAAAAAAAATCACGGGC155CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 7074 from patent US 7365185.
EA628195.1:230-249
GCCGATTCGTTAAAAAAAAAAATCACGGGC230CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 7201 from patent US 7365185.
EA628322.1:312-331
GCCGATTCGTTAAAAAAAAAAATCACGGGC312CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 65044 from patent US 7365185.
EA686165.1:23532-23551
GCCGATTCGTTAAAAAAAAAAATCACGGGC23532CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 77643 from patent US 7365185.
EA698764.1:584-603
GCCGATTCGTTAAAAAAAAAAATCACGGGC584CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 7070 from patent US 7790958.
GX493045.1:155-174
GCCGATTCGTTAAAAAAAAAAATCACGGGC155CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 7074 from patent US 7790958.
GX493049.1:230-249
GCCGATTCGTTAAAAAAAAAAATCACGGGC230CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 7201 from patent US 7790958.
GX493176.1:312-331
GCCGATTCGTTAAAAAAAAAAATCACGGGC312CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 65044 from patent US 7790958.
GX551019.1:23532-23551
GCCGATTCGTTAAAAAAAAAAATCACGGGC23532CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 77643 from patent US 7790958.
GX563618.1:584-603
GCCGATTCGTTAAAAAAAAAAATCACGGGC584CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 42694 from patent US 7868149.
GX946786.1:23532-23551
GCCGATTCGTTAAAAAAAAAAATCACGGGC23532CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Sequence 49989 from patent US 7868149.
GX954081.1:584-603
GCCGATTCGTTAAAAAAAAAAATCACGGGC584CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza glaberrima DNA, clone: W0001-9-A13-72A08R1, left end.
FT548095.1:40-59
AATCCCCTTTCTGCTCTTCTTGGGCATCAT40CAGTTTCTTGCTCCTCGTCCTCGTCCATGGCTGCGCTTGCTGAGAAGAGA
Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0048G04, cultivar: Kasalath, *** SEQUENCING IN PROGRESS ***.
AP012865.1:82238-82257
CTCGCCGATTCGTTAAAAAAAATCACAGGC82238CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034E02.
AP003232.3:87708-87727
GCCGATTCGTTAAAAAAAAAAATCACGGGC87708CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
AP014957.1:34097972-34097991
GCCGATTCGTTAAAAAAAAAAATCACGGGC34097972CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 1.
AP027385.1:34523767-34523786
TCGCCGATTCGTTAAAAAAAAATCACGGGC34523767CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
CP012609.1:35102257-35102276
TCGCCGATTCGTTAAAAAAAAATCACGGGC35102257CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Indica Group cultivar Shuhui498 chromosome 1, partial sequence.
CP018157.1:35041711-35041730
TCGCCGATTCGTTAAAAAAAAATCACGGGC35041711CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Indica Group cultivar Minghui 63 chromosome 1.
CP054676.1:35860474-35860493
TCGCCGATTCGTTAAAAAAAAATCACGGGC35860474CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Indica Group cultivar Zhenshan 97 chromosome 1.
CP056052.1:35633428-35633447
GCCGATTCGTTAAAAAAAAAAATCACGGGC35633428CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa Japonica Group cultivar Nipponbare isolate AGIS-1.0 chromosome 1.
CP132235.1:34704738-34704757
GCCGATTCGTTAAAAAAAAAAATCACGGGC34704738CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa indica subgroup cultivar ZH8015 chromosome 01.
CP141105.1:35793124-35793143
TCGCCGATTCGTTAAAAAAAAATCACGGGC35793124CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Oryza sativa genome assembly, chromosome: 1.
OX637246.1:34752248-34752267
GCCGATTCGTTAAAAAAAAAAATCACGGGC34752248CAGTTTCTTGCTCCTCGTCCAGCACCGCCCTATCGGGCAAGGGTGGCAGC
Rhinatrema bivittatum genome assembly, chromosome: 3.
LR584389.1:576855067-576855086
CAGGGTCAGAACCAAAAGATCAATCCGAAG576855067GGACGAGGAGCAAGAAACTGGAACGCATGAACCAGAAGTCAGGAGCAGGA
OR_BBa0021H16.f OR_BBa Oryza sativa f. spontanea genomic clone OR_BBa0021H16 5', genomic survey sequence.
CL625521.1:139-158
GCTGCCACCCTTGCCCGATAGGGCGGTGCT139GGACGAGGAGCAAGAAACTGGCCCGCGATTTTTTTTTTAACGAATCGGCG
OR_CBa0062B06.f OR_CBa Oryza rufipogon genomic clone OR_CBa0062B06 5', genomic survey sequence.
CL836856.1:138-157
GCTGCCACCCTTGCCCGATAGGGCGGTGCT138GGACGAGGAGCAAGAAACTGGCCCGCGATTTTTTTTTTTTAACGAATCGG
OG_BBa0012K18.r OG_BBa Oryza glaberrima genomic clone OG_BBa0012K18 3', genomic survey sequence.
CW660354.1:140-159
GCTGCCACCCTTGCCCGATAGGGCGGTGCT140GGACGAGGAGCAAGAAACTGGCCCGTGAATTTTTTTTTGAACGAATCGGC
Oryza glaberrima DNA, clone: W0001-9-B07-98B11R1, right end.
FT772828.1:212-231
GCTGCCACCCTTGCCCGATAGGGCGGTGCT212GGACGAGGAGCAAGAAACTGGCCCGTGAATTTTTTTTTGAACGAATCGGC
OSIABa0007M15.f O. sativa ssp. indica cv. MH63 BAC library Oryza sativa Indica Group genomic clone OSIABa0007M15 5', genomic survey sequence.
KG707231.1:138-157
GCTGCCACCCTTGCCCGATAGGGCGGTGCT138GGACGAGGAGCAAGAAACTGGCCCGTGATTTTTTTTTAACGAATCGGCGA
OB_ABa0041D24.r OB_ABa Oryza barthii genomic clone OB_ABa0041D24 3', genomic survey sequence.
KS479160.1:140-159
GCTGCCACCCTTGCCCGATAGGGCGGTGCT140GGACGAGGAGCAAGAAACTGGCCCGTGAATTTTTTTTTTTTTGAACGAAT
OB_ABa0087C10.r OB_ABa Oryza barthii genomic clone OB_ABa0087C10 3', genomic survey sequence.
KS511414.1:140-159
GCTGCCACCCTTGCCCGATAGGGCGGTGCT140GGACGAGGAGCAAGAAACTGGCCCGTGAATTTTTTTTTTTTTGAACGAAT
OB_ABa0088H10.r OB_ABa Oryza barthii genomic clone OB_ABa0088H10 3', genomic survey sequence.
KS512329.1:140-159
GCTGCCACCCTTGCCCGATAGGGCGGTGCT140GGACGAGGAGCAAGAAACTGGCCCGTGAATTTTTTTTTTTTTGAACGAAT
Oryza sativa Japonica Group cultivar Changxianggeng 1813 chromosome 7.
CP101147.1:9159384-9159403
GCTGCCACCCTTGCCCGATAGGGCGGTGCT9159384GGACGAGGAGCAAGAAACTGGCCCGTGATTTTTTTTTTTAACGAATCGGC
Musa acuminata subsp. malaccensis isolate AA chromosome 4.
CP126373.1:37424490-37424509
GCTCGTGGAACCTGCACGGAGCATGTCAGC37424490GGACGAGGAGCAAGAAACTGAGAGGCAGAACAAAGCCTTCCGCGAAGACT
Musa acuminata subsp. malaccensis isolate AA chromosome 15.
CP126384.1:37392558-37392577
GCTCGTGGAACCTGCACGGAGCATGTCAGC37392558GGACGAGGAGCAAGAAACTGAGAGGCAGAACAAAGCCTTCCGCGAAGACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGTTTCTTGCTCCTCGTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTTTCTTGCTCCTCGTCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.549 | 0.541 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTTTCTTGCTCCTCGTCC&k=0&no_gap=0&offset=0&limit=50
1.147 | 0.598 | search_minus_done; http://172.18.8.135:50400/match?q=GGACGAGGAGCAAGAAACTG&k=0&no_gap=0&offset=0&limit=26
1.154 | 0.008 | cgi_end;

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