GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:41:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Ed0035F10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0035F10r, mRNA sequence.
BQ410962.1:72-93
CTATAAAAATTTTCATTCTTGTTGTCACAA72CATAAAAATGCTCCCTTTGTCAAAAAAGAAAAAAAAATTCACTGAGACAAAT
GA__Ed0036E01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01r, mRNA sequence.
BQ411063.1:72-93
CTATAAAAATTTTCATTCTTGTTGTCACAA72CATAAAAATGCTCCCTTTGTCAAAAAAGAAAAAAAAATTCACTGAGACAAAT
GR__Eb0047I08.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0047I08 5', mRNA sequence.
CO111451.1:71-92
GCTAAAAAATTTTCATTCTTGTTGTCACAA71CATAAAAATGCTCCCTTTGTCAAAAAAGAAAAAAAAATCACTCAAACAAATT
H10_425241.94.S1104112093.anther-SP8734 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK704210.1:59-80
CTATAAAAATTTTCATTCTTGTTGTCACAA59CATAAAAATGCTCCCTTTGTCAAAAAAAGAAAAAAAAATTCACTGAGACAAA
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:11714594-11714615
GCTAAAAAAATTTCATTCTTGTTGTCACAA11714594CATAAAAATGCTCCCTTTGTCAAAAAAGAAAAAAAATTCACTGGGACAAATT
Sequence 3878 from patent US 10766935.
MV647273.1:1985-2006
ATTTGTCTCAGTGAATTTTTTTTTCTTTTT1985TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTATAG
Sequence 3890 from patent US 10766935.
MV647285.1:1961-1982
ATTTGTCTGAGTGAATTTTTTTTTCTTTTT1961TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAATTTTTTTAGC
Sequence 3891 from patent US 10766935.
MV647286.1:2058-2079
AATTTGTCTGAGTGATTTTTTTTTCTTTTT2058TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTTAGC
Sequence 3878 from patent US 11566053.
OS270752.1:1985-2006
ATTTGTCTCAGTGAATTTTTTTTTCTTTTT1985TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTATAG
Sequence 3890 from patent US 11566053.
OS270764.1:1961-1982
ATTTGTCTGAGTGAATTTTTTTTTCTTTTT1961TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAATTTTTTTAGC
Sequence 3891 from patent US 11566053.
OS270765.1:2058-2079
AATTTGTCTGAGTGATTTTTTTTTCTTTTT2058TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTTAGC
GA__Ed0036E01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01f, mRNA sequence.
BQ411062.1:483-504
ATTTGTCTCAGTGAATTTTTTTTTCTTTTT483TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTATAG
EST690 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 10-a2 5', mRNA sequence.
EE593088.1:787-808
ATTTGTCTGAGTGAATTTTTTTTTCTTTTT787TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAACGAAATTTTTTTAGC
UFL_104_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES843886.1:611-632
TTTGTCTCAGTGAATTTTTTTTTCTTTTTT611TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTATAG
Gossypioides kirkii chromosome KI_09.
CP032251.1:29393781-29393802
ATTTGTCTCAGTGAATTTTTTTTTCTTTTT29393781TGACAAAGGGAGCATTTTTATGTTAGTTACAACTAGAATGAAAATTTTTATA
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:31750806-31750827
AATTTGTCTGAGTGATTTTTTTTTCTTTTT31750806TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTTAGC
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:70689814-70689835
ATTTGTCTCAGTGAATTTTTTTTTCTTTTT70689814TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAAATTTTTATAG
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:113829900-113829921
TTTGTCTCAGTGAATTTTTTTTTTCTTTTC113829900TGACAAAGGGAGCATTTTTATGTTGTGACAACAAGAATGAAGATTTTTTATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATAAAAATGCTCCCTTTGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATAAAAATGCTCCCTTTGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.338 | 0.330 | search_plus_done; http://172.18.8.135:50400/match?q=CATAAAAATGCTCCCTTTGTCA&k=0&no_gap=0&offset=0&limit=50
1.073 | 0.735 | search_minus_done; http://172.18.8.135:50400/match?q=TGACAAAGGGAGCATTTTTATG&k=0&no_gap=0&offset=0&limit=45
1.082 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).