GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 17:01:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH040_09779m, 5' end sequence.
AB450717.1:280-302
CCCAATTACGAGAGCTGAGATTGCTTGTAA280CATATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAGATATATATAT
Pyrus pyrifolia mRNA, clone: NFR1_29_15, 5' end sequence, expressed in fruit.
HX748076.1:382-404
CCCAATTACGAGAGCTGAGATTGCTTGTAA382CATATTAGCCAGAGCCTGCAGATTGCATATAGATTT
Pyrus pyrifolia mRNA, clone: NFR5_15_06, 5' end sequence, expressed in fruit.
HX756356.1:280-302
CCCAATTACGAGAGCTGAGATTGCTTGTAA280CATATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAG
Pyrus pyrifolia mRNA, clone: NFR5_15_79, 5' end sequence, expressed in fruit.
HX756428.1:280-302
CCCAATTACGAGAGCTGAGATTGCTTGTAA280CATATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAG
TSA: Pyrus pyrifolia mRNA, contig: contig_3464.
FX396385.1:383-405
CCCAATTACGAGAGCTGAGATTGCTTGTAA383CATATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAGATATATATAT
TSA: Pyrus communis mRNA, contig: lc5750.
FX614337.1:402-424
CCCAATTACGAGAGCTCAGATTGCTTGTAA402CATATTAGCCAGAGCCTGCAGATTGCATATAGATTATATATAGATATATATAT
TSA: Pyrus communis mRNA, contig: lc21801.
FX630283.1:278-300
CCCAATTACGAGAGCTGAGATTGCTTGTAA278CATATTAGCCAGAGCCTGCAGATTGGATATAGAT
TSA: Pyrus x bretschneideri Unigene9672_XinShao mRNA sequence.
JR604786.1:993-1015
CCCAATTACGAGAGCTGAGATTGCTTGTAA993CATATTAGCCAGAGCCTGCAGATTGCATATGGATTATATATAGATATATATAT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:28340854-28340876
AATGTATATATGAGAGCTGAGTACTTGTAA28340854CATATTAGCCAGAGCCTGCAGATCATTGCATATATATATATATATATATATAT
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:31378327-31378349
AATGTATATATGAGAGCTGAGTACTTGTAA31378327CATATTAGCCAGAGCCTGCAGATCATTGCATACAGATTACATATATATATATA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:39681056-39681078
CCCAATTACGAGAGCTCAGATTGCTTGTAA39681056CATATTAGCCAGAGCCTGCAGATTGCATATAGATTATATATAGATATATATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATATTAGCCAGAGCCTGCAGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATATTAGCCAGAGCCTGCAGAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.407 | 0.398 | search_plus_done; http://172.18.8.135:50400/match?q=CATATTAGCCAGAGCCTGCAGAT&k=0&no_gap=0&offset=0&limit=50
0.429 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTGCAGGCTCTGGCTAATATG&k=0&no_gap=0&offset=0&limit=39
0.429 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).