GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 08:15:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus sylvestris genome assembly, chromosome: 13.
OU696515.1:6432534-6432556
ATCCATGCAAACTTGCAGATAATTATGACC6432534CATCAAACAAAACTAGCCGAACCCAGATGAAAGAGAGAGTGAGAGTAAGAGTG
Pyrus communis genome assembly, chromosome: 13.
OY757080.1:21884438-21884460
ATCCATGCAAACTTGCAGAGAATTATGACC21884438CATCAAACAAAACTAGCCGAACCCAGAGAGAGAGAGAGAGAGAGAGTCCAAGC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH031_07495m, 5' end sequence.
AB450711.1:273-295
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTG273GGTTCGGCTAGTTTTGTTTGATGGGTCATAATTCTCTGCAAGTTTGCATGGAT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH032_07495m, 5' end sequence.
AB450712.1:273-295
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTG273GGTTCGGCTAGTTTTGTTTGATGGGTCATAATTCTCTGCAAGTTTGCATGGAT
Pyrus pyrifolia mRNA, clone: NFR1_12_95, 5' end sequence, expressed in fruit.
HX746657.1:2-24
G2GGTTCGGCTAGTTTTGTTTGATGGGTCATAATTCTCTGCAAGTTTGCATGGAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCAAACAAAACTAGCCGAACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCAAACAAAACTAGCCGAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CATCAAACAAAACTAGCCGAACC&k=0&no_gap=0&offset=0&limit=50
0.198 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTCGGCTAGTTTTGTTTGATG&k=0&no_gap=0&offset=0&limit=48
0.200 | 0.002 | cgi_end;

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