GGGenome | Results

2025-04-15 07:08:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

GA__Ed0035F10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0035F10r, mRNA sequence.
BQ410962.1:246-266

AGTTCCCTTTAAACTTGAAATCTTGGTATG246CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT

GA__Ed0036E01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01r, mRNA sequence.
BQ411063.1:246-266

AGTTCCCTTTAAACTTGAAATCTTGGTATG246CATCAAACTTGTCAAGGCTGGCCTACAAGTGAAGGTTTATAGAATGCATGT

GR__Eb0047I08.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0047I08 5', mRNA sequence.
CO111451.1:250-270

AGTTCCCTTTAAACTTGAAATCTTGGTATG250CATCAAACTTGTCAAGGCTGGCCTAAAAGTGAAGGTTTATAGAATGCATGT

h2_E12.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO103918.1:168-188

AGTTCCCTTTAAACTTGAAATCTTGGTATG168CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT

H06_420284.90.S1104072089.anther-SP4506 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703780.1:166-186

AGTTCCCTTTAAACTTGAAATCTTGGTATG166CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT

H10_425241.94.S1104112093.anther-SP8734 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK704210.1:234-254

AGTTCCCTTTAAACTTGAAATCTTGGTATG234CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT

Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:11714773-11714793

AGTTCCCTTTAAACTTGAAATCTTGGTATG11714773CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT

Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001408.1:74733771-74733791

AAATAGCCGCCTGCCTTGATTGGATGGATG74733771CATCAAACTTGTCAAGGCTGGACGGACCTACAAACTTCGGAACACGGCAAA

Sequence 3878 from patent US 10766935.
MV647273.1:1812-1832

ACATGCATTCTATAAACCTTCACTTCTAGG1812CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Sequence 3890 from patent US 10766935.
MV647285.1:1777-1797

ACATGCATTCTATAAACCTTCACTTCTAGG1777CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Sequence 3891 from patent US 10766935.
MV647286.1:1880-1900

ACATGCATTCTATAAACCTTCACTTCTAGG1880CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Sequence 3878 from patent US 11566053.
OS270752.1:1812-1832

ACATGCATTCTATAAACCTTCACTTCTAGG1812CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Sequence 3890 from patent US 11566053.
OS270764.1:1777-1797

ACATGCATTCTATAAACCTTCACTTCTAGG1777CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Sequence 3891 from patent US 11566053.
OS270765.1:1880-1900

ACATGCATTCTATAAACCTTCACTTCTAGG1880CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

GA__Eb0013E18f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0013E18f, mRNA sequence.
BF271950.1:663-683

ACATGCATTCTATANACCTTCACTTCTAGG663CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGGACT

GA__Ed0036E01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01f, mRNA sequence.
BQ411062.1:310-330

ACATGCATTCTATAAACCTTCACTTCTAGG310CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

CM058G08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457774.1:410-430

ACATGCATTCTATAAACCTTCACTTCTAGG410CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

EST1070003 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559363.1:865-885

ACATGCATTCTATAAACCTTCACTTCTAGG865CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

EST690 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 10-a2 5', mRNA sequence.
EE593088.1:603-623

ACATGCATTCTATAAACCTTCACTTCTAGG603CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

UFL_328_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES819969.1:733-753

ACATGCATTCTATAAACCTTCACTTCTAGG733CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

UFL_338_23 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832686.1:730-750

ACATGCATTCTATAAACCTTCACTTCTAGG730CCAGCCTTGACAAGTTTGATGCATACAAGATTTCAAGTTTAAAGGGAACTA

UFL_104_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES843886.1:437-457

ACATGCATTCTATAAACCTTCACTTCTAGG437CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Gossypioides kirkii chromosome KI_09.
CP032251.1:29393589-29393609

ACATGCATTCTATAAACCTTCACTTCTAGG29393589CCAGCCTTGACAAGTTTGATGCATACCCAGATTTCAAGTTTAAAGGGAACT

Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:31750628-31750648

ACATGCATTCTATAAACCTTCACTTCTAGG31750628CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:79293961-79293981

ACATGCATTCTATAAACCTTCACTTCTAGG79293961CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:113829726-113829746

ACATGCATTTTATAAACCTTCACTTCTAGG113829726CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
0.447 | 0.438 | search_plus_done; http://172.18.8.135:50400/match?q=CATCAAACTTGTCAAGGCTGG&k=0&no_gap=0&offset=0&limit=50
1.120 | 0.673 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGCCTTGACAAGTTTGATG&k=0&no_gap=0&offset=0&limit=42
1.132 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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