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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:47:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141959.1:33521140-33521162
AGGCCGTTGCCGCTGATGATATAAATATTG33521140CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:7353945-7353967
AGGCCGTTGCCGCTGATGATATAAATATTG7353945CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:7460679-7460701
AGGCCGTTGCCGCTGATGATGTAAATATTG7460679CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:7670074-7670096
AGGCCGTAGCCGCAGATGATATAAATATTG7670074CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:32789781-32789803
AGGCCGTTGCCGCTGATGATATAAATATTG32789781CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:7382193-7382215
AGGCCGTAGCCGCAGATGATATAAATATTG7382193CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143364.1:32183749-32183771
AGGCCGTTGCCGCTGATGATATAAATATTG32183749CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus hybrid cultivar cultivar SH6 chromosome 7.
CP143381.1:32120945-32120967
AGGCCGTTGTCGCTGATGATATAAATATTG32120945CATCAGCCTACGAGCACATACACCACCATCATAGGGTCGCTTAATGGAAGATA
Malus sylvestris genome assembly, chromosome: 7.
OU696509.1:32566561-32566583
AGGCCGTTGCCGCTGATGATATAAATATTG32566561CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:7437512-7437534
AGGCCGTAGCCGCAGATGATATAAATATTG7437512CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 7.
OU696683.1:32118849-32118871
AGGCCGTTGCCGCTGATGATATAAATATTG32118849CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:7904143-7904165
AGGCCGTAGCCGCAGATGATATAAATATTG7904143CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 7.
OU744548.1:33145636-33145658
AGGCCGTTGCCGCTGATGATATAAATATTG33145636CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:7419983-7420005
AGGCCGTAGCCGCAGATGATATAAATATTG7419983CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 7.
OU744959.1:32737353-32737375
AGGCCGTTGCCGCTGATGATATAAATATTG32737353CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:7437453-7437475
AGGCCGTAGCCGCAGATGATATAAATATTG7437453CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Malus domestica genome assembly, chromosome: 7.
OU744997.1:32382951-32382973
AGGCCGTTGCCGCTGATGATATAAATATTG32382951CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Crataegus laevigata genome assembly, chromosome: 10.
OY756947.1:35144519-35144541
AGGCCGTTGCCGCTGATGATATAAATATTG35144519CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTAATGGAAGATA
Pyrus communis genome assembly, chromosome: 5.
OY757072.1:27205620-27205642
AGGCCGTTGCCGCTGATGATATAAATATTG27205620CATCAGCCTACGAGCACATACACCACTATCATAGGGACGCTTAATGGAAGATA
Dryas octopetala genome assembly, chromosome: 3.
OY992834.1:2379932-2379954
AGGTCGTTGCCGCTGATGATATAGATATTG2379932CATCAGCCTACGAGCACATACACCACCATCATAGGGACGCTTATTAGAAGGTG
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH049_00296m, 5' end sequence.
AB450724.1:538-560
ATCTTCCATTAAGCCGTCCCTATGATAGTG538GTGTATGTGCTCGTAGGCTGATGCAATATTTATATCATCAGCGGCAACGG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:28576326-28576348
TATCTTCCATTAAGCGTCCCTATGATAGTG28576326GTGTATGTGCTCGTAGGCTGATGCAATATTTACAGCATCAGCAGCAACGGCCT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141916.1:3530103-3530125
TATCTTCCATTAAGCGTCCCTATGATGGTG3530103GTGTATGTGCTCGTAGGCTGATGCAATATTTATATCATCAGCGGCAACGGCCT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:3076388-3076410
TATCTTCCATTAAGCGTCCCTATGATGGTG3076388GTGTATGTGCTCGTAGGCTGATGCAATATTTATATCATCAGCGGCAACGGCCT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:824004-824026
TATCTTCCATTAAGCGTCCCTATGATGGTG824004GTGTATGTGCTCGTAGGCTGATGCAATATTTAGATCATCAGCGGCAACGGCCT
Potentilla anserina genome assembly, chromosome: 7.
OW176987.1:22290861-22290883
CATATTCCATTAAGCGTCCATATGATGGTG22290861GTGTATGTGCTCGTAGGCTGATGCAGTATCTATATCATCAGCGGGAACGACCA
Malus x robusta genome assembly, chromosome: 10.
OY720334.1:3294686-3294708
TATCTTCCATTAAGCGTCCCTATGATGGTG3294686GTGTATGTGCTCGTAGGCTGATGCAATATTTATATCATCAGCGGCAACGGCCT
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:33446292-33446314
TATCTTCCATTAAGCGTCCCTATGATGGTG33446292GTGTATGTGCTCGTAGGCTGATGCAATATTTAGATCATCAGCGGCAAAGGCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCAGCCTACGAGCACATACAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCAGCCTACGAGCACATACAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.183 | 0.175 | search_plus_done; http://172.18.8.135:50400/match?q=CATCAGCCTACGAGCACATACAC&k=0&no_gap=0&offset=0&limit=50
0.396 | 0.214 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTATGTGCTCGTAGGCTGATG&k=0&no_gap=0&offset=0&limit=30
0.402 | 0.005 | cgi_end;

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