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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-20 05:22:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

mte1-1E6FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR293765.1:145-169
CAATCCCATAAATTCCAACCATATGGACCC145CATCATCAGGTCCCTCATCAAGAAGCGATTTCACTTCTTGTACTCGAGAGTGCAA
Medicago truncatula chromosome 6 clone mth2-14d9, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC148240.52:23221-23245
CAATCCCATAAATTCCAACCATATGGACCC23221CATCATCAGGTCCCTCATCAAGAAGCGATTTCACTTGTTGTACTCGAGACTGCAA
Medicago truncatula chromosome 6 clone mth2-40d11, WORKING DRAFT SEQUENCE, 3 ordered pieces.
AC149212.53:75864-75888
CAATCCCATAAATTCCAACCATATGGACCC75864CATCATCAGGTCCCTCATCAAGAAGCGATTTCACTTGTTGTACTCGAGACTGCAA
Medicago truncatula clone mth2-152p10, WORKING DRAFT SEQUENCE, 3 ordered pieces.
AC225450.11:8240-8264
CAATCCCATAAATTCCAACCATATGGACCC8240CATCATCAGGTCCCTCATCAAGAAGCGATTTCACTTGTTGTACTCGAGACTGCAA
Medicago truncatula chromosome 6 clone mth2-10d14, complete sequence.
AC126790.38:127318-127342
CAATGCCAAAAATTCCAACCATATGGACCC127318CATCATCAGGTCCCTCATCAAGAAGTGATTTCACTTGTTGTACTCGAGACTGCAA
Medicago truncatula chromosome 6 clone mth2-17a6, complete sequence.
AC148154.15:62651-62675
CAATCCCATAAATTCCAACCATATGGACCC62651CATCATCAGGTCCCTCATCAAGAAGCGATTTCACTTCTTGTACTCGAGAGTGCAA
Medicago lupulina genome assembly, chromosome: 8.
OY283146.1:54761082-54761106
CAATCCCATAAATTCCAACCATATGGACCC54761082CATCATCAGGTCCCTCATCAAGAAGCGATTTCACATGTTGTACTCGAGACTGCAA
EST304707 KV2 Medicago truncatula cDNA clone KV2-5I7, mRNA sequence.
AW256570.1:55-79
TTGCAGTCTCGAGTACAACAAGTGAAATCG55CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
NF108F10ST1F1090 Developing stem Medicago truncatula cDNA clone NF108F10ST 5', mRNA sequence.
AW696588.1:203-227
TTGCAGTCTCGAGTACAACAAGTGAAATCG203CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
NF102A05EC1F1035 Elicited cell culture Medicago truncatula cDNA clone NF102A05EC 5', mRNA sequence.
BF650880.1:147-171
TTGCACTCTCGAGTACAAGAAGTGAAATCG147CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
EST484813 GVN Medicago truncatula cDNA clone pGVN-71F3 5' end, mRNA sequence.
BG583063.1:600-624
TTGCAGTCTCGAGTACAACAAGTGAAATCG600CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
EST610964 KVKC Medicago truncatula cDNA clone pKVKC-5F6, mRNA sequence.
BQ165095.1:69-93
TTGCAGTCTCGAGTACAACAAGTGAAATCG69CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
EST649345 KV3 Medicago truncatula cDNA clone KV3-54G3, mRNA sequence.
CB892376.1:666-690
TTGCAGTCTCGAGTACAACAAGTGAAATCG666CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGAA
EST670449 MTUS Medicago truncatula cDNA clone MTUS-23F5, mRNA sequence.
CF069728.1:585-609
TTGCAGTCTCGAGTACAACAAGTGAAATCG585CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
T221114b Medicago truncatula BAC library Medicago truncatula genomic clone 24E08, genomic survey sequence.
AZ757934.1:112-136
TTGCAGTCTCGAGTACAACAAGTGAAATCA112CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
T221200b Medicago truncatula BAC library Medicago truncatula genomic clone 50O01, genomic survey sequence.
AZ758020.1:112-136
TTGCAGTCTCGAGTACAACAAGTGAAATCA112CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
MBENT19TF mth2 Medicago truncatula genomic clone 10D14, genomic survey sequence.
CG934202.1:111-135
TTGCAGTCTCGAGTACAACAAGTGAAATCA111CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
MBEMQ21TR mth2 Medicago truncatula genomic clone 4C17, genomic survey sequence.
CG969947.1:106-130
TTGCAGTCTCGAGTACAACAAGTGAAATCA106CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
mth2-188O13RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR478505.1:110-134
TTGCAGTCTCGAGTACAACAAGTGAAATCA110CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
Medicago truncatula chromosome 6 clone mth2-14d9, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC148240.52:50653-50677
TTGCAGTCTCGAGTACAACAAGTGAAATCG50653CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG
Medicago truncatula clone mth2-16h4, WORKING DRAFT SEQUENCE, 12 unordered pieces.
AC202482.18:54041-54065
TTGCAGTCTCGAGTACAACAAGTGAAATCA54041CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTTTGGCATTG
Medicago truncatula clone mth2-144h15, WORKING DRAFT SEQUENCE, 51 unordered pieces.
AC225523.11:92246-92270
TTGCAGTCTCGAGTACAACAAGTGAAATCG92246CTTCTTGATGAGGGACCTGATGATGGGGTCCATATGGTTGGAATTTATGGGATTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATCATCAGGTCCCTCATCAAGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCATCAGGTCCCTCATCAAGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.333 | 0.325 | search_plus_done; http://172.18.8.135:50400/match?q=CATCATCAGGTCCCTCATCAAGAAG&k=0&no_gap=0&offset=0&limit=50
0.564 | 0.231 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTGATGAGGGACCTGATGATG&k=0&no_gap=0&offset=0&limit=43
0.574 | 0.009 | cgi_end;

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