GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 09:37:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Musa acuminata AAA Group Unigene54312_B1 mRNA sequence.
JV337618.1:147-166
AGCTCTTGTGCTCAAAGGCTCCCCAGTAGT147CATCATCGTCAACCCAAGTGACTGGCTTCTGCAAGTCGATACAGTTCCCC
Embrapa_Mbalbisiana_PKW_Leaf_010_a04_b Embrapa_Musa balbisiana_PKW_Leaf Musa balbisiana cDNA, mRNA sequence.
FL646900.1:229-248
GGGGAACTGTATCGCCTTGCAGAAGCCAGT229CACTTGGGTTGACGATGATGACTACTGGGGAGCCTTTGAGCACAAGAGCT
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:41810199-41810218
GGGGAACTGTATCGACTTGCAGAAGCCAGT41810199CACTTGGGTTGACGATGATGACTACTGGGGAGCCTTTGAGCACAAGGGCT
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:40582197-40582216
GGGGAACTGTATCGACTTGCAGAAGCCAGT40582197CACTTGGGTTGACGATGATGACTACTGGGGAGCCTTTGAGCACAAGGGCT
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:41478794-41478813
GGGGAACTGTATCGACTTGCAGAAGCCAGT41478794CACTTGGGTTGACGATGATGACTACTGGGGAGCCTTTGAGCACAAGAGCT
Musa schizocarpa genome assembly, chromosome: S06.
LS990921.1:45443784-45443803
GGGGAACTGTATCGACTTGCAGAAGCCAGT45443784CACTTGGGTTGACGATGATGACTACTGGGGAGCCTTTGAGCACAAGAGCT
Anania fuscalis genome assembly, chromosome: 26.
OX493351.1:4721266-4721285
TTTTGTAACCCAAAGCGTTTTTCCATAGAT4721266CACTTGGGTTGACGATGATGGAGGTGTTCTGACTCAAGGAGTCACTTACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCATCGTCAACCCAAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCATCGTCAACCCAAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.358 | 0.349 | search_plus_done; http://172.18.8.135:50400/match?q=CATCATCGTCAACCCAAGTG&k=0&no_gap=0&offset=0&limit=50
0.518 | 0.160 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTGGGTTGACGATGATG&k=0&no_gap=0&offset=0&limit=49
0.522 | 0.004 | cgi_end;

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