GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:35:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 23.
OX090931.1:30987684-30987703
TGATGTAGCCCAGGCTGGTATCAAATTCAC30987684CATCCTGAGGGCTTGGATTATAGGCTATCTACCACCAGGCCTGGGTGAGT
Heterocephalus glaber genome assembly, chromosome: 23.
OX090963.1:36233585-36233604
TGATGTAGCCCAGGCTGGTATCAAATTCAC36233585CATCCTGAGGGCTTGGATTATAGGCTATCTACCACCAGGCCTGGGTGAGT
TSA: Capsicum annuum MGMT_Contig33209 mRNA sequence.
JW083453.1:876-895
CTTTGTTGGTGTTAGAAATACTTGAGATGA876CATCCTGAGGGCTTGGATTAGGAAGCCCTAATTGTAAGGCTACACTAACA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:112755234-112755253
CTTTGTTGGTGTTAGAAATACTTGAGATGA112755234CATCCTGAGGGCTTGGATTAGGAAGCCCTAATTGTAAGGCTACACTAACA
Acomys percivali genome assembly, chromosome: 6.
OU015747.1:112559404-112559423
CCACCAGCAGAACCTGGTAGTGTGCACTGT112559404TAATCCAAGCCCTCAGGATGCAGAAGCAAGTGTAGTGCTGGAAATTTGAG
Peromyscus eremicus genome assembly, chromosome: 3.
OX460396.1:119786803-119786822
CACAGCTGGGCATGTGGTGGCTCACACCTG119786803TAATCCAAGCCCTCAGGATGTGGAGACAAGATTTCAGGAGTTTGAGGCCA
Peromyscus eremicus genome assembly, chromosome: 3.
OX460468.1:120699473-120699492
CACAGCTGGGCATGTGGTGGCTCACACCTG120699473TAATCCAAGCCCTCAGGATGTGGAGACAAGATTTCAGGAGTTTGAGGCCA
Heterocephalus glaber genome assembly, chromosome: 19.
OZ001084.1:37470122-37470141
ACTCACCCAGGCCTGGTGGTAGATAGCCTA37470122TAATCCAAGCCCTCAGGATGGTGAATTTGATACCAGCCTGGGCTACATCA
Heterocephalus glaber genome assembly, chromosome: 19.
OZ001127.1:38662522-38662541
ACTCACCCAGGCCTGGTGGTAGATAGCCTA38662522TAATCCAAGCCCTCAGGATGGTGAATTTGATACCAGCCTGGGCTACATCA
KS23013G12 KS23 Capsicum annuum cDNA, mRNA sequence.
GD112226.1:528-547
TGTTAGTGTAGCCTTACAATTAGGGCTTCC528TAATCCAAGCCCTCAGGATGTCATCTCAAGTATTTCTAACACCAACAAAG
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:164792209-164792228
TGTTAGTGTAGCCTTACAATTAGGGCTTCC164792209TAATCCAAGCCCTCAGGATGTCATCTCAAGTATTTCTAACACCAACAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATCCTGAGGGCTTGGATTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCCTGAGGGCTTGGATTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.204 | 0.195 | search_plus_done; http://172.18.8.135:50400/match?q=CATCCTGAGGGCTTGGATTA&k=0&no_gap=0&offset=0&limit=50
0.394 | 0.189 | search_minus_done; http://172.18.8.135:50400/match?q=TAATCCAAGCCCTCAGGATG&k=0&no_gap=0&offset=0&limit=46
0.398 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).