GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:53:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lutra lutra genome assembly, chromosome: 5.
LR738407.1:13322705-13322724
TACAGTAATTCCTTTCAATATAATGATATG13322705CATCCTTCAATTATATCCAGGAATGGATTTTAAAGATGTGGGAATGTGGT
Rhizophagus irregularis strain DAOM-197198 chromosome 19.
CP080806.1:3250307-3250326
ACTCATTTTCGTCAAAGATTTTGTCATCAT3250307CATCCTTCAATTATATCCAGCGATAATACTTGTGATAATTCTCAGAAAAG
Rhizophagus irregularis strain 4401 chromosome 19.
CP080839.1:3090389-3090408
ACTCATTTTCGTCAAAGATTTTGTCATCAT3090389CATCCTTCAATTATATCCAGCGATAATACTTGTGATAATTCTCAGAAAAG
Rhizophagus irregularis strain B3 chromosome 19.
CP080872.1:3165205-3165224
ACTCATTTTCGTCAAAGATTTTGTCATCAT3165205CATCCTTCAATTATATCCAGCGATAATACTTGTGATAATTCTCAGAAAAG
Rhizophagus irregularis strain A1 chromosome 19.
CP080938.1:3169395-3169414
ACTCATTTTCGTCAAAGATTTTGTCATCAT3169395CATCCTTCAATTATATCCAGCGATAATACTTGTGATAATTCTCAGAAAAG
Rhizophagus irregularis isolate DAOM-197198 chromosome 19.
CP110707.1:3244689-3244708
ACTCATTTTCGTCAAAGATTTTGTCATCAT3244689CATCCTTCAATTATATCCAGCGATAATACTTGTGATAATTCTCAGAAAAG
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:1489725291-1489725310
TCCAAAGAAGTGTATCTGAGGTTCTATCAC1489725291CATCCTTCAATTATATCCAGGACTAGACTGACTAACCAAACAATCATTAA
Martes martes genome assembly, chromosome: 5.
OY734067.1:152654848-152654867
ACCACATTCCCACATCTTTAAAATCCATTC152654848CTGGATATAATTGAAGGATGCATATAATTGTATTGAAAGGAATTACTGTA
Rhizophagus irregularis strain C2 chromosome 19.
CP080903.1:1257152-1257171
CTTTTCTGAGAATTATCACAAGTATTATCG1257152CTGGATATAATTGAAGGATGATGATGACAAAATCTTTGACGAAAATGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCCTTCAATTATATCCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCCTTCAATTATATCCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=CATCCTTCAATTATATCCAG&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=CTGGATATAATTGAAGGATG&k=0&no_gap=0&offset=0&limit=43
0.150 | 0.001 | cgi_end;

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