GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:03:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-1016 Pericarp Coffea canephora cDNA clone cccp15e19 5', mRNA sequence.
DV663336.1:39-63
TGCATTAGAGAGATATATAGAGGTCAGATC39CATCGTATCTCGCCCTCTCTCTTTCATCTCTCCTCTTCTTTTGATCAGCAGCAGA
CGN-48450 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w6m22 5', mRNA sequence.
DV702129.1:17-41
ATATAGAGATCAGATC17CATCGTATCTCGCCCTCTCTCTTTCATCTCTCCTCTTCTTTTGATCAGCAGCAGA
CC-L01_018_A01 Coffea young leaves Coffea canephora cDNA clone CC-L01_018_A01, mRNA sequence.
EE193037.1:28-52
ATTNGAGAGATATATAGAGATCAGATC28CATCGTATCTCGCCCTCTCTCTTTCATCTCTCCTCTTCTTTTGATCANNAGCAGA
CC-F01_006_B10 Cherry of different development stage Coffea canephora cDNA clone CC-F01_006_B10, mRNA sequence.
EE196765.1:38-62
TGCATTAGAGAGATATATAGAGATCAGATC38CATCGTATCTCGCCCTCTCTCTTTCATCTCTCCTCTTCTTTTGATCAGCAGCAGA
TransId-281222 CarCatBudEnri2 Coffea arabica cDNA clone CarCatBudEnri2_81-F12-PAL17d similar to Protein phosphatase 2C - Nicotiana tabacum (Common tobacco), mRNA sequence.
GT020855.1:58-82
TGCATTAGAGAGATATATAGAGGTCAGATC58CATCGTATCTCGCCCTCTCTCTTTCATCTCTCCTCTTCTTTTGATCAGCAGCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCGTATCTCGCCCTCTCTCTTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCGTATCTCGCCCTCTCTCTTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.400 | 0.392 | search_plus_done; http://172.18.8.135:50400/match?q=CATCGTATCTCGCCCTCTCTCTTTC&k=0&no_gap=0&offset=0&limit=50
0.437 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=GAAAGAGAGAGGGCGAGATACGATG&k=0&no_gap=0&offset=0&limit=45
0.437 | 0.000 | cgi_end;

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