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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:47:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Phocoena phocoena genome assembly, chromosome: 9.
OZ004766.1:68651697-68651715
AGTATAATGTTCTAGACATAGATCATAGAA68651697CATCTGGTGTAATGTAGGCTTGTCGTATATAGACTTTATTATGTTGAAG
Brassica oleracea var. italica EST, clone AAFC_WHRI_Zennia023A07_M13orT7orSP6_ForR.
AM395668.1:51-69
GGAAAGAAACGTCTTGAATATCAATTACCA51CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
0079830 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV155968.1:589-607
GGAAAGAAACGTCTTGAATATCAATTACCA589CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_16553.
FX669422.1:1100-1118
GGAAAGAAACGTCTTGAATATCAATTACCA1100CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGCAGTTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_786.
FX694298.1:1099-1117
GGAAAGAAACGTCTTGAATATCAATAACCA1099CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49663.
FX733917.1:1004-1022
GGAAAGAAACGTCTTGAATATCAATTACCA1004CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGAAGTTG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_22788.
FX736931.1:212-230
GGAAAGAAACGTCTTGAATATCAATAACCA212CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
TSA: Raphanus sativus RS03274 mRNA sequence.
JT787821.1:1137-1155
GGAAAGAAACGTCTTGAATATCAATTACCA1137CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGCAGTTG
TSA: Raphanus sativus RS03275 mRNA sequence.
JT787822.1:1137-1155
GGAAAGAAACGTCTTGAATATCAATTACCA1137CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGCAGTTG
BOGKT08TF BOGK Brassica oleracea genomic clone BOGKT08, genomic survey sequence.
BH478258.1:223-241
CTTCTACATTTTGTACCACTTAACTTACCA223CATCTGGTGTAATGTAGGCGGCTAGGGAATCAGCAAA
BoTo06P17/F BOTO1 Brassica oleracea genomic, genomic survey sequence.
FI569241.1:364-382
CTTCTACATTTTGTACCACTTAACTTACCA364CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
BOT01-6P17TF BOT01 Brassica oleracea genomic clone BOT01-6P17, genomic survey sequence.
FI690391.1:314-332
CTTCTACATTTTGTACCACTTAACTTACCA314CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
BOT01-35G16TF BOT01 Brassica oleracea genomic clone BOT01-35G16, genomic survey sequence.
FI701362.1:318-336
CTTCTACATTTTGTACCACTTAACTTACCA318CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
BOT01-46P13TF BOT01 Brassica oleracea genomic clone BOT01-46P13, genomic survey sequence.
FI713664.1:317-335
CTTCTACATTTTGTACCACTTAACTTACCA317CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
Raphanus sativus cultivar WK10039 clone RsH014F17, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC255135.1:46455-46473
TTCTACAATTTTGTACCTCTTAACTTACCA46455CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGCAGTTG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:183276-183294
CTTCTACATTTTGTACGACTTAACTTACCA183276CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTATAGAAGTTG
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:24347956-24347974
TTCTACAATTTTGTACCTCTTAACTTACCA24347956CATCTGGTGTAATGTAGGCGCTAGGATCAGCAATTTCGTACAGCAGTTG
1_Tps_b3v08.
OD017235.1:2691-2709
AAAATTTCTTACACCATAGTTTGTCATATT2691CATCTGGTGTAATGTAGGCCTACCATAAAACTTACCCATTAATTATTTT
Orthosia gracilis genome assembly, chromosome: 3.
OX387266.1:15134004-15134022
GTTTGCATGCAATAGGCTCGTCCCCATAAT15134004CATCTGGTGTAATGTAGGCAGGTACACTTTAGCCTTAACCTTTGGGCAA
Andrena trimmerana genome assembly, chromosome: 1.
OX578059.1:37944429-37944447
ATTTTAAGCGACCTGTAAAAACGATTCTAT37944429CATCTGGTGTAATGTAGGCACATATACATCGTAATGGAGTACTGCGATG
Melanotus villosus genome assembly, chromosome: 4.
OY720421.1:79567617-79567635
CACGCTAAACCAACTGAGCGACGACCGCGA79567617CATCTGGTGTAATGTAGGCTGGGTTAAACAAGTGCTGTAGACAGTAACT
Phania funesta genome assembly, chromosome: 5.
OZ010656.1:69477867-69477885
ATGTGTTATTTTTAAAACAGTGTTGCAACG69477867CATCTGGTGTAATGTAGGCGCATTACTGATTAATTATTGATTATTTTAC
Taurulus bubalis genome assembly, chromosome: 15.
OU342725.1:10312910-10312928
TGTTGTCATCCAAGAGGAAGAGGACAGACA10312910GCCTACATTACACCAGATGGCTACAAAGAACCAGCAGACCAATAACAAA
BNAR01GH_T3_001_D03_09NOV2006_025 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES899850.1:205-223
CAACTTCTATACGAAATTGCTGATCCTAGC205GCCTACATTACACCAGATGTGGTAATTGATATTCAAGACGTTTCTTTCC
0079917 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156055.1:165-183
CAACTTCTATACGAAATTGCTGATCCTAGC165GCCTACATTACACCAGATGTGGTAATTGATATTCAAGACGTTTCTTTCC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:43147-43165
CAACTTCTATACGAAATTGCTGATCCTAGC43147GCCTACATTACACCAGATGTGGTAAGTTAGGAGGTACAAAATGTAGAAG
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69444804-69444822
CAACTTCTATACGAAATTGCTGATCCTAGC69444804GCCTACATTACACCAGATGTGGTAAGTTAGGAGGTACAAAATGTAGAAG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41499225-41499243
CAACTTCTATACGAAATTGCTGATCCTAGC41499225GCCTACATTACACCAGATGTGGTAAGTTAAGTGGTACAAAATGTAGAAG
Brassica rapa genome, scaffold: A09.
LR031568.1:57564462-57564480
CAACTTCTATACGAAATTGCTGATCCTAGC57564462GCCTACATTACACCAGATGTGGTAAGTTAGGAGGTACAAAATGTAGAAG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50740490-50740508
CAACTTCTATACGAAATTGCTGATCCTAGC50740490GCCTACATTACACCAGATGTGGTAAGTTAAGTGGTACAAAATGTAGAAG
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:19684995-19685013
CAACTGCTGTACGAAATTGCTGATCCTAGC19684995GCCTACATTACACCAGATGTGGTAAGTTAAGAGGTACAAAATTGTAGAA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:68087947-68087965
CAACTTCTATACGAAATTGCTGATCCTAGC68087947GCCTACATTACACCAGATGTGGTAAGTTAGGAGGTACAAAATGTAGAAG
Andrena bucephala genome assembly, chromosome: 1.
OX387715.1:85718204-85718222
CATCGCAGTACTCCATCACGATGTATATGT85718204GCCTACATTACACCAGATGATAGAATCGTTTTTACAGGTCGCTTAAAAT
Andrena carantonica genome assembly, chromosome: 1.
OX731548.1:69153647-69153665
CATCGCAGTACTCCATTACGATGTATATGT69153647GCCTACATTACACCAGATGATAGAATCGTTTTTACAGGTCGCTTAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCTGGTGTAATGTAGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCTGGTGTAATGTAGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.353 | 0.344 | search_plus_done; http://172.18.8.135:50400/match?q=CATCTGGTGTAATGTAGGC&k=0&no_gap=0&offset=0&limit=50
0.558 | 0.206 | search_minus_done; http://172.18.8.135:50400/match?q=GCCTACATTACACCAGATG&k=0&no_gap=0&offset=0&limit=28
0.567 | 0.008 | cgi_end;

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