GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:16:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WS0262.B21_C23 WS-PP-N-A-12 Picea glauca cDNA clone WS0262_C23 3', mRNA sequence.
CO234565.1:549-568
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT549CATCTTCTTTATTGACTTGCATTCAGGAGCTCTGTAGGCAACGAAGGAAC
WS0039.B21_O09 WS-X-A-3 Picea glauca cDNA clone WS0039_O09 3', mRNA sequence.
CO245046.1:574-593
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT574CATCTTCTTTATTGACTTGCATTCAGGC
WS00734.B21_H02 WS-PS-N-A-8 Picea glauca cDNA clone WS00734_H02 3, mRNA sequence.
DR573288.1:574-593
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT574CATCTTCTTTATTGACTTGCATTCAGGAGCTCTGTAGGCAACGAAGGAAC
GQ0048.TB_D03 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone GQ0048_D03 3', mRNA sequence.
DV971323.2:557-576
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT557CATCTTCTTTATTGACTTGCATTCAGGAGCTCTGTAGGCAACGAAGGAAC
GQ00411.TB_I04 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone GQ00411_I04 3', mRNA sequence.
DV974938.2:501-520
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT501CATCTTCTTTATTGACTTGCATTCAGGAGCTCTGTAGGCAACGAAAGAAC
GQ02829.SP6_L23 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02829_L23 3', mRNA sequence.
EX329343.1:562-581
ATAGACGTCCGCCTTAGGGCCAAGGGCCGT562CATCTTCTTTATTGACTTGCATTCAGGAGCTCTGTAGGCAACGAAGGAAC
Picea abies EST, clone K0000400046C04F1.
AM174300.1:76-95
GTTCCTTCGCTGCCTACAGAGCTCCTGAAT76GCAAGTCAATAAAGAAGATGACGGCCCTTGGCCCTAAGGCGGACGTCTAT
GQ02829.B7_L23 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02829_L23 5', mRNA sequence.
EX328993.1:257-276
GTTCCTTCGTTGCCTACAGAGCTCCTGAAT257GCAAGTCAATAAAGAAGATGACGGCCCTTGGCCCTAAGGCGGACGTCTAT
GQ03011.B7_G12 GQ030 - Xylem planings - daytime and seasonal Picea glauca cDNA clone GQ03011_G12 5', mRNA sequence.
EX341231.1:522-541
GTTCCTTCGTTGCCTACAGAGCTCCTGAAT522GCAAGTCAATAAAGAAGATGACGGCCCTTGGCCCTAAGGCGGACGTCTAT
Picea glauca clone GQ00411_I04 mRNA sequence.
BT100699.1:831-850
GTTCTTTCGTTGCCTACAGAGCTCCTGAAT831GCAAGTCAATAAAGAAGATGACGGCCCTTGGCCCTAAGGCGGACGTCTAT
Calendula officinalis genome assembly, chromosome: 2.
OY970821.1:6275260-6275279
GAGGCTGCTATCAGAACCATCTCTCCATAT6275260GCAAGTCAATAAAGAAGATGTTAAAACATACTTCCTAACAGAGGGTGTTT
Sarcophaga caerulescens genome assembly, chromosome: 1.
OV656872.1:45629371-45629390
AAATCTTTGAGATGAGTTAGGTTTTTGTCT45629371GCAAGTCAATAAAGAAGATGAAAATTTTAAAGAAAATAAAAAATTCTATA
Nezara viridula genome assembly, chromosome: 2.
OV725078.1:114128956-114128975
AAAAAAAAAACCTGACGAAACAAAAAAATA114128956GCAAGTCAATAAAGAAGATGCGTAGATTTTTGATATTACGACTTAAACAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATCTTCTTTATTGACTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATCTTCTTTATTGACTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.371 | 0.362 | search_plus_done; http://172.18.8.135:50400/match?q=CATCTTCTTTATTGACTTGC&k=0&no_gap=0&offset=0&limit=50
0.523 | 0.152 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGTCAATAAAGAAGATG&k=0&no_gap=0&offset=0&limit=44
0.528 | 0.005 | cgi_end;

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