GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:49:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Hyperoodon ampullatus genome assembly, chromosome: 1.
OX457056.1:188458423-188458442
TTTTTGTGATGGTAGGAGCCTGGGAAACCA188458423CATGAATTCTGCTAATTTTTTGCTTCCCCAATAAACCTGACATTATTCAA
Arctium minus genome assembly, chromosome: 5.
OX941084.1:13174675-13174694
CAAGTGCCCTTGCTTCCCTATGATTTCTTC13174675CATGAATTCTGCTAATTTTTGAAACAGCGAAAGTCAACGTCATGCACACA
Humulus lupulus genome assembly, chromosome: 7.
OY720654.1:194834940-194834959
TTGTTATGATAGCGTACATTATAATTATAA194834940CATGAATTCTGCTAATTTTTGAAAAATTTCTAATAATTTCCGATACTGAA
Noctua pronuba genome assembly, chromosome: 20.
LR999912.1:1186568-1186587
TCGGGTGATTTCGACTTGTAAATAATTTTT1186568CATGAATTCTGCTAATTTTTTGTAGCGCAGAACAGAATATTTTTTTTAAA
Dolomedes plantarius genome assembly, chromosome: 11.
OU015500.1:71421253-71421272
TCGCCTTTAAATACTTATCATTTATAGTCA71421253CATGAATTCTGCTAATTTTTTAGGACGCAGTACAGTGATGTTATTTAACA
Hermaeophaga mercurialis genome assembly, chromosome: 8.
OX638365.1:33243884-33243903
CGAAATACCACGCAAAAGTCTAGATTGAAA33243884CATGAATTCTGCTAATTTTTCTAAAATAGGGTATCAATAAGGGAGGTAAC
Rana temporaria genome assembly, chromosome: 2.
LR991681.1:59344131-59344150
CTAAAACTAAAATAAAGTGCCGAATGTTAT59344131AAAAATTAGCAGAATTCATGAAATGCCAGATACATTATTATACATCGTTA
Macropis europaea genome assembly, chromosome: 6.
OU744348.1:23655121-23655140
TGGATCGCTTTAAATCATTCCAATTAAGTT23655121AAAAATTAGCAGAATTCATGAAGCAGAGTAAAAAGGATCTGATCAGCATA
Heligmosomoides polygyrus polygyrus genome assembly, chromosome: I.
OX377205.1:72966697-72966716
TGCATTTACATCGACTTTCTTTTTCTGTTA72966697AAAAATTAGCAGAATTCATGAAAAAATGAAAATGAAAAAATCAAGAAAGT
Antedon bifida genome assembly, chromosome: 11.
OY727103.1:7751550-7751569
TTCTATGAAGAAATAATCCCACAATGAAAA7751550AAAAATTAGCAGAATTCATGCATCATCGTCATTTAATAATATGGTAATAA
Antedon bifida genome assembly, chromosome: 11.
OY727103.1:7756082-7756101
TTCTATGAAGAAATAATCCCACAATGAAAA7756082AAAAATTAGCAGAATTCATGCATCATCGTCATTTAATAATATATGGTAAT
Antedon bifida genome assembly, chromosome: 11.
OY727103.1:7770353-7770372
TTCTATGAAGAAATAATCCCATAATGAAAA7770353AAAAATTAGCAGAATTCATGCATCATCGTCATTTAATAATATGGTAATAA
Antedon bifida genome assembly, chromosome: 11.
OY727103.1:7840668-7840687
TCTATGAAGAAATAATCCCATAATGAAAAA7840668AAAAATTAGCAGAATTCATGCATCATCTTCATTTAATAATAATGGTAATA
Antedon bifida genome assembly, chromosome: 11.
OY727103.1:7970276-7970295
TTCTATAAAGAAATAATCCCACAATGAAAA7970276AAAAATTAGCAGAATTCATGCATCATCGTCATTTAATAATATGGTAATAA
Ophion ventricosus genome assembly, chromosome: 12.
OZ010722.1:16712822-16712841
GAGTACAATCCAATTAGTGGTGGGATTAAA16712822AAAAATTAGCAGAATTCATGCCTGTGACCCGCGCACACTTCAGTCAACAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGAATTCTGCTAATTTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGAATTCTGCTAATTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.177 | search_plus_done; http://172.18.8.135:50400/match?q=CATGAATTCTGCTAATTTTT&k=0&no_gap=0&offset=0&limit=50
0.323 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=AAAAATTAGCAGAATTCATG&k=0&no_gap=0&offset=0&limit=44
0.329 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).