GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:11:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Glycine max cultivar Williams 82 chromosome 15.
CP126440.1:16822178-16822197
AACGTGGGTTTCTTTGCTTGGAGAATCATG16822178CATGACAGGTTGCCAACAAAAGTCAACTTGAGGAAAATAAATATAAGTAT
Asteroscopus sphinx genome assembly, chromosome: 20.
OX453021.1:3669063-3669082
CTTGGAACGAATCCAAGGAAAGTTTAGGAA3669063CATGACAGGTTGCCAACAAACTATTTCTCTGCCCTGACAAAACGACCCTG
Porphyra yezoensis cDNA, clone:PFL014a05_r, 5'end.
AU191264.1:317-336
GCGGACGCGTCGACGCAGCCCGCCCGCGTC317TTTGTTGGCAACCTGTCATGGGAGACCCGCTCGCCCAGCCTCGAGGCCCA
Porphyra yezoensis cDNA clone:PM039d12_r, 5' end.
AV434175.1:343-362
GCGGACGCGTCGACGCAGCCCGCCCGCGTC343TTTGTTGGCAACCTGTCATGGGAGACCCGCTCGCCCAGCCTCGAGGCCCA
GM_WBa0019D07.r GM_WBa Glycine max genomic clone GM_WBa0019D07 3', genomic survey sequence.
ED622969.1:514-533
ATACTTATATTTATTTTCCTCAAGTTGACT514TTTGTTGGCAACCTGTCATGCATGATTCTCCAAGCAAAGAAACCCACGTT
Mucilaginibacter mallensis strain MP1X4 genome assembly, chromosome: I.
LT629740.1:3823867-3823886
AGCGGTAATATAGGCGAGCTGAATTATACG3823867TTTGTTGGCAACCTGTCATGGGCGCGTGCTAAGTGGGAACATTACGATGA
Sabethes cyaneus genome assembly, chromosome: 2.
OX030888.1:219307721-219307740
ACTTCCGAGAGAAATTCGCAAGCTTTCGAG219307721TTTGTTGGCAACCTGTCATGGAGTTGTCCGGATATTTCCTTTCCATTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGACAGGTTGCCAACAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGACAGGTTGCCAACAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.370 | 0.361 | search_plus_done; http://172.18.8.135:50400/match?q=CATGACAGGTTGCCAACAAA&k=0&no_gap=0&offset=0&limit=50
0.523 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGTTGGCAACCTGTCATG&k=0&no_gap=0&offset=0&limit=48
0.527 | 0.004 | cgi_end;

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