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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:48:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Citrus unshiu mRNA, clone: MAPEI72, 5' end, expressed in albedo.
AU300540.1:412-430
GTTATGGNGGATTGACCCAGAGGATGGGTA412CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAT
UCRCS01_01aa09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa09, mRNA sequence.
CB290206.1:94-112
AGTTATGGTGGATGACCCAGAGGATGGGTA94CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
UCRCS01_06ab04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab04, mRNA sequence.
CB293384.1:388-406
AGTTATGGTGGATGACCCAGAGGATGGGTA388CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
UCRPT01_04cg08_g3 Poncirus trifoliata CTV-challenged cDNA library - AGI Citrus trifoliata cDNA clone UCRPT01_04cg08, mRNA sequence.
CD576522.1:401-419
AGTTATGGTGGATGACCCAGAGGATGGGTA401CATGCGGAAAAGATGTACCCCTGGAGACTCAATTCATGCTTGTGGAGAG
UCRPT01_5_005_A04_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_005_T3_A04, mRNA sequence.
CX543149.1:418-436
AGTTATGGTGGATGACCCAGAGGATGGGTA418CATGCGGAAAAGATGTACCCCTGGAGACTCAATTCATGCTTGTGGAGAG
UCRCS11_03G18_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003G18, mRNA sequence.
DN619067.1:416-434
AGTTATGGTGGATGACCCAGAGGATGGGTA416CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CSAH-PNP1246C20 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246C20 5', mRNA sequence.
DR403756.1:435-453
AGTTATGGTGGATGACCCAGAGGATGGGTA435CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
IC0AAA85CE09RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY294478.1:412-430
AGTTATGGTGGATGACCCAGAGGATGGGTA412CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C1-100-124-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY656779.1:414-432
AGTTATGGTGGATGACCCAGAGGATGGGTA414CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C1-100-136-E12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY657831.1:251-269
AGTTATGGTGGATGACCCAGAGGATGGGTA251CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C1-102-050-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY669590.1:446-464
AGTTATGGGGGATGACCCAGAGGATGGGTA446CATGCGGAAAAGATGTACCACTGGAGACTCCATTCGTGCTTGTGGAGAG
CS00-C1-102-096-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY671231.1:429-447
AGTTATGGTGGATGACCCAGAGGATGGGTA429CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C3-700-006-G01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY693000.1:420-438
AGTTATGGTGGATGACCCAGAGGATGGGTA420CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C3-700-071-F02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY698418.1:309-327
AGTTATGGTGGATGACCCAGAGGATGGGTA309CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C3-701-033-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
EY704509.1:514-532
GTTATGGTGGATGACCCCACAGGATGGGTA514CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CS00-C3-703-083-B02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY724896.1:433-451
AGTTATGGTGGATGACCCAGAGGATGGGTA433CATGCGGAAAAGATGTACCACTGGAGACTNCATTCATGCTTGTGGAGAG
CS00-C3-705-006-B12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY741929.1:412-430
AGTTATGGTGGATGACCCAGAGGATGGGTA412CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C1-100-053-A03-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequence.
EY762322.1:422-440
AGTTATGGTGGATGACCCAGAGGATGGGTA422CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C1-102-086-H09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY773575.1:183-201
AGTTATGGTGGATGACCCAGAGGATGGGTA183CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C1-102-082-H07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY773667.1:453-471
AGTTATGGTGGATGACCCAGAGGATGGGTA453CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C1-102-093-G07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus reticulata cDNA, mRNA sequence.
EY774388.1:472-490
AGTTATGGTGGATGACCCAGAGGATGGGTA472CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C3-701-005-D09-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY793341.1:431-449
AGTTATGGTGGATGACCCAGAGGATGGGTA431CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
CR05-C3-701-073-F03-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY799154.1:282-300
AGTTATGGTGGATGACCCAGAGGATGGGTA282CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
LT33-C1-003-052-C09-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY881129.1:443-461
AGTTATGGTGGATGACCCAGAGGATGGGTA443CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
C31001A09EF AbioticL1 Citrus clementina cDNA clone C31001A09, mRNA sequence.
FC868494.1:432-450
AGTTATGGTGGATGACCCAGAGGATGGGTA432CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
IC0AAA85CE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CE09, mRNA sequence.
FC879093.1:412-430
AGTTATGGTGGATGACCCAGAGGATGGGTA412CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
Citrus sinensis genome assembly, chromosome: 6.
OY754323.1:6629551-6629569
AGTTATGGTGGATGACCCAGAGGATGGGTA6629551CATGCGGAAAAGATGTACCACTGGAGACTCAATTCATGCTTGTGGAGAG
Laspeyria flexula genome assembly, chromosome: 25.
LR989974.1:3220023-3220041
GGACGCGAATGTCGACAGCTTTTCAGCTAT3220023CATGCGGAAAAGATGTACCTCCCTATGGCACCGATTACGCACTACTACC
Orthosia gracilis genome assembly, chromosome: 9.
OX387273.1:41084575-41084593
CCGAAGAAAAAAGTAGGCTGCCAAGGATAG41084575CATGCGGAAAAGATGTACCGCCAAACCCACCGGGTGCCTCTTGGGCTGG
Cenchrus americanus genome assembly, chromosome: Pg7.
OZ001403.1:115531280-115531298
CCTGGGGATCCCGGTCAATTGGGAGCTCTG115531280GGTACATCTTTTCCGCATGGAGCTCATCACGCAGCCCACGACGGAGCCG
Pieris brassicae genome assembly, chromosome: 6.
LR989937.1:4979357-4979375
CGACTACAAGGCCCATCAACTACGTTGGCT4979357GGTACATCTTTTCCGCATGGGCCAAGATACTGAAGGAAGCCTACCGACC
Laspeyria flexula genome assembly, chromosome: 7.
LR989956.1:2197521-2197539
GGTACTAGTGCGTACTCGGCGCCATAGAGA2197521GGTACATCTTTTCCGCATGATAGCTGAAAAGCTGTCGACATTCGCGACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGCGGAAAAGATGTACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGCGGAAAAGATGTACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.807 | 1.798 | search_plus_done; http://172.18.8.135:50400/match?q=CATGCGGAAAAGATGTACC&k=0&no_gap=0&offset=0&limit=50
1.933 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=GGTACATCTTTTCCGCATG&k=0&no_gap=0&offset=0&limit=21
1.935 | 0.002 | cgi_end;

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