GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:45:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH070I10, complete sequence.
AC172879.2:4939-4958
AGTCTCCCCTGAAAAAGTTGCAACAGAAGA4939CATGCGGAAACCCGTTAAAATAACATCATAGAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:64015728-64015747
AGTCTCCCCTGAAAAAGTTGCAACAGAAGA64015728CATGCGGAAACCCGTTAAAATAACATCATAGAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:12836407-12836426
AGTCTCCCCTGAAAAAGTTGCAACAGAAGA12836407CATGCGGAAACCCGTTAAAATAAATAGAGAGAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:32829974-32829993
AGTCTCCCCTGAAAAAGTTGCAACAGAAGA32829974CATGCGGAAACCCGTTAAAATAACATCATAGAGAGAGAGAGAGAGAGAGA
Brassica rapa genome, scaffold: A03.
LR031572.1:2806470-2806489
TCTCTCTCTCTCTCTCTCTCTATGATGTTA2806470TTTTAACGGGTTTCCGCATGTCTTCGGTTGCAACTTTTTCAGGGGAGACT
Brassica rapa genome, scaffold: A03.
LR031572.1:21262533-21262552
TCTCTCTCTCTCTCTCTCTCTCTCTCTTTA21262533TTTTAACGGGTTTCCGCATGTCTTCTGTTGCAACTTTTTCAGGGGAGACT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:2812080-2812099
TCTCTCTCTCTCTCTCTCTCTATGATGTTA2812080TTTTAACGGGTTTCCGCATGTCTTCGGTTGCAACTTTTTCAGGGGAGACT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:21389147-21389166
TCTCTCTCTCTCTCTCTCTCTCTCTATTTA21389147TTTTAACGGGTTTCCGCATGTCTTCTGTTGCAACTTTTTCAGGGGAGACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGCGGAAACCCGTTAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGCGGAAACCCGTTAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CATGCGGAAACCCGTTAAAA&k=0&no_gap=0&offset=0&limit=50
0.154 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTAACGGGTTTCCGCATG&k=0&no_gap=0&offset=0&limit=46
0.156 | 0.003 | cgi_end;

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