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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 15:03:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3861 from patent US 9976157.
MI669855.1:2635-2661
GAATACTATTTCAGATCTTCTTCTGAACCG2635CATGGATCTGTCTCTTTTAGTTATTACTAAGGGTCTGACAAAAACTGGAGATGATTA
Sequence 3861 from patent US 10501750.
MO571339.1:2635-2661
GAATACTATTTCAGATCTTCTTCTGAACCG2635CATGGATCTGTCTCTTTTAGTTATTACTAAGGGTCTGACAAAAACTGGAGATGATTA
Sequence 3861 from patent US 11293032.
OO008052.1:2635-2661
GAATACTATTTCAGATCTTCTTCTGAACCG2635CATGGATCTGTCTCTTTTAGTTATTACTAAGGGTCTGACAAAAACTGGAGATGATTA
Solanum lycopersicum cDNA, clone: FA13DH11, 5' end, expressed in maturing fruit.
BP879179.1:86-112
GAATACTATTTCAGATCTTCTTCTGAACCG86CATGGATCTGTCTCTTTTAGTTATTACTAAGGGTCTGACAAAAACTGGAGATGATTA
SV5_43A05_SV5_43_034 SV5 Solanum chacoense cDNA, mRNA sequence.
DN977581.1:65-91
GAATACTATCTCAGATCTTCTTCTAAACCG65CATGGATCTGTCTCTTTTAGTTATTACAAAGGGTCTGACAAAAACTGGAGATGATTA
KS24063A02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123709.1:9-35
CTGAACCG9CATGGATCTGTCTCTTTTAGTTATTACTAAGGGTCTGACGAAAACTGGAGATGATTA
Solanum lycopersicum Micro-Tom DNA, chromosome 10, draft genome sequence.
AP028944.1:61522573-61522599
GAATACTATTTCAGATCTTCTTCTGAACCG61522573CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTCTTAATTCAGGAAAA
Solanum lycopersicum cultivar I-3 chromosome 10.
CP023766.1:62375550-62375576
GAATACTATTTCAGATCTTCTTCTGAACCG62375550CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTCTTAATTCAGGAAAA
Solanum tuberosum cultivar Solyntus chromosome 10.
CP055243.1:42527451-42527477
GAATACTATCTCAGATCTTCTTCTGAACCG42527451CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTATTAAATCAGGCAAA
Solanum pennellii chromosome ch10, complete genome.
HG975449.1:79249456-79249482
GAATACTATCTCAGATCTTCTTCTGAACCG79249456CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTCTTAATTCAGGAAAA
Solanum lycopersicum chromosome ch10, complete genome.
HG975522.1:61699384-61699410
GAATACTATTTCAGATCTTCTTCTGAACCG61699384CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTCTTAATTCAGGAAAA
Solanum lycopersicum genome assembly, chromosome: 10.
OU640353.1:63416415-63416441
GAATACTATTTCAGATCTTCTTCTGAACCG63416415CATGGATCTGTCTCTTTTAGTTATTACTAAGGTGAGAATACTCTTAATTCAGGAAAA
TSA: Capsicum annuum MGMT_Contig3516, mRNA sequence.
JW053760.1:1096-1122
TAATCATCTCCAGTTTTCGTCAGACCCTTA1096GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGCAGAAGATCTGCGATAGTATTC
TSA: Capsicum annuum EJ_MegaContig_10166, mRNA sequence.
JW130337.1:1095-1121
TAATCATCTCCAGTTTTCGTCAGACCCTTA1095GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGCAGAAGATCTGCGATAGTATTC
Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-17p1 map 10, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC254729.6:91424-91450
TTTTCCTGAATTAAGAGTATTCTCACCTTA91424GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGAAGAAGATCTGAAATAGTATTC
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:235214467-235214493
TTTTCCTGATTTAAGAGTATTCTCACCTTA235214467GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGCAGAAGATCTGCGATAGTATTC
Solanum tuberosum cultivar P8 chromosome 10.
CP046683.1:56698684-56698710
TTTGCCTGAKTTAAGAGTATTCTCACCTTA56698684GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGAAGAAGATCTGAGATAGTATTC
Solanum tuberosum cultivar MSH/14-112 chromosome 10.
CP046694.1:56698852-56698878
TTTGCCTGAKTTAAGAGTATTCTCACCTTA56698852GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGAAGAAGATCTGAGATAGTATTC
Solanum pinnatisectum cultivar CGN17745 chromosome 10.
CP047557.1:56690632-56690658
TTTGCCTGATTTAAGAGTATTCTCACCTTA56690632GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGAAGAAGATCTGAGATAGTATTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:239768293-239768319
TTTTCCTGATTTAAGAGTATTCTCACCTTA239768293GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGCAGAAGATCTGCGATAGTATTC
Solanum verrucosum cultivar 11H23 chromosome 10.
CP133621.1:54366688-54366714
ATGGCCTGATTTAATAGTATTCTCACCTTA54366688GTAATAACTAAAAGAGACAGATCCATGCGGTTCAGAAGAAGATCTGAGATAGTATTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGGATCTGTCTCTTTTAGTTATTAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGATCTGTCTCTTTTAGTTATTAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.750 | 0.741 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGATCTGTCTCTTTTAGTTATTAC&k=0&no_gap=0&offset=0&limit=50
0.904 | 0.154 | search_minus_done; http://172.18.8.135:50400/match?q=GTAATAACTAAAAGAGACAGATCCATG&k=0&no_gap=0&offset=0&limit=38
0.910 | 0.006 | cgi_end;

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