GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:53:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Capsicum annuum MGMT_Contig1433, mRNA sequence.
JW051677.1:133-153
CTGCCGATGTTGTCGATAAGTATTAGGAAT133CATGGGAACTGGAGAAGGTTGAAAGCCAGGTCTAGTCATGTTTGTGAACCC
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:196027594-196027614
CAATTGCTATGACTATTTACGTGGACTAAC196027594CATGGGAACTGGAGAAGGTTGAAAGCCAGGTCTAGTCATGTTTGTGAACCC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:200432349-200432369
CAATTGCTATGACTATTTACGTGGACTAAC200432349CATGGGAACTGGAGAAGGTTGAAAGCCAGGTCTAGTCATGTTTGTGAACCC
KS14026F07 KS14 Capsicum annuum cDNA, mRNA sequence.
GD059863.1:146-166
GGGTTCACAAACATGACTAGACCTGGCTTT146CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACAACATCGGCAG
KS14036D08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD060764.1:146-166
GGGTTCACAAACATGACTAGACCTGGCTTT146CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACAACATCGGCAG
KS14048G08 KS14 Capsicum annuum cDNA, mRNA sequence.
GD061900.1:146-166
GGGTTCACAAACATGACTAGACCTGGCTTT146CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACAACATCGGCAG
KS14049A03 KS14 Capsicum annuum cDNA, mRNA sequence.
GD061919.1:146-166
GGGTTCACAAACATGACTAGACCTGGCTTT146CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACAACATCGGCAG
KS17045B02 KS17 Capsicum annuum cDNA, mRNA sequence.
GD079679.1:565-585
GGGTTCACAAACATGACTAGACCTGGCTTT565CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACAACATCGGCAG
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:52993609-52993629
GGGTTCACAAACACCCTCAGACCTAGCTAT52993609CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATCGACCATATCGGCAG
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:43813437-43813457
GGGTTCACAAACACCCTCAGACCTAGCTAT43813437CAACCTTCTCCAGTTCCCATGATTCCTAATACTTATTGACCATATCGGCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGGGAACTGGAGAAGGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGGAACTGGAGAAGGTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGGAACTGGAGAAGGTTG&k=0&no_gap=0&offset=0&limit=50
0.627 | 0.452 | search_minus_done; http://172.18.8.135:50400/match?q=CAACCTTCTCCAGTTCCCATG&k=0&no_gap=0&offset=0&limit=47
0.632 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).