GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-04 12:04:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

TSA: Pyrus x bretschneideri Unigene75655_XinShao mRNA sequence.
JR661058.1:277-296
TTCTGCAGGAGCAAGGGGGACATTGAGGAC277CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26532757-26532776
TAGTGCAGGAACAAGCGGGACATTGAGAAC26532757CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCACCAGAATCATC
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:26582222-26582241
TAGTGCAGGAACAAGCGGGACATTGAGAAC26582222CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCACCAGAATCATC
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18549278-18549297
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18549278CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18557231-18557250
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18557231CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18565348-18565367
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18565348CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:18589628-18589647
TTCTGCAGGAGCAAGGGGGACATTGAGAAC18589628CATGGGATCTTGGCAGCAAAGTGTTTTGTCCAAACACCGCCCTCATTATT
TSA: Pyrus communis mRNA, contig: lc48636.
FX654933.1:258-277
AATAATGAGGGCGGTGTTTGGACAAAACAC258TTTGCTGCCAAGATCCCATGGTTCTCAATGTCCCCCTTGCTCCTGCAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGGGATCTTGGCAGCAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGGATCTTGGCAGCAAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.248 | 0.239 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGGATCTTGGCAGCAAA&k=0&no_gap=0&offset=0&limit=50
0.321 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGCTGCCAAGATCCCATG&k=0&no_gap=0&offset=0&limit=43
0.322 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).