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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 15:32:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Solanum torvum mRNA, clone: TVR09E11, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS109712.1:466-485
ATGGAGAGAAGAAGCCTTTCTTCGTCCATT466CATGGGGAATTGAATTTTGGAAAAATTTTACCCGCGGCAAAGATATAATT
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:21165456-21165475
CTTCTATCATTTTTTTGGCCATAGGCATAT21165456CATGGGGAATTGAATTTTGGGTTTTGATGAAGTGGACGTCACCGAACCGT
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:8837245-8837264
GGCCTAGGGTAAGACCTTCTGTATGCAGTT8837245CATGGGGAATTGAATTTTGGTGTTCGGTTTGAGGGTAGTTACCAGTAAAC
Samia ricini White DNA, chromosome 03, sequence.
AP028159.1:4038666-4038685
AGGCAAGCTAGTACGAATGGACTTTTTTTA4038666CATGGGGAATTGAATTTTGGCATCCGTCTACCAGTAATAATCCATATTAT
Sciurus vulgaris genome assembly, chromosome: 4.
LR738614.1:14371297-14371316
GTGTTTTAGAAAAAACATAGCTAGTTCATA14371297CCAAAATTCAATTCCCCATGTGTTCTACCTTGAGATAATCATTGTATTCT
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:102386450-102386469
ACGGTTCGGTGACGTCCACTTCATCAAAAC102386450CCAAAATTCAATTCCCCATGATATGCCTATGGCCAAAAAAATGATAGAAG
Gossypium hirsutum clone NBRI_GE53791 microsatellite sequence.
JX611589.1:5-24
AAAC5CCAAAATTCAATTCCCCATGATATGCCTATGGCCAAAAAAATGATAGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGGGGAATTGAATTTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGGGGAATTGAATTTTGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.286 | 0.277 | search_plus_done; http://172.18.8.135:50400/match?q=CATGGGGAATTGAATTTTGG&k=0&no_gap=0&offset=0&limit=50
0.400 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAAATTCAATTCCCCATG&k=0&no_gap=0&offset=0&limit=46
0.402 | 0.002 | cgi_end;

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