GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 14:25:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ORNL225 Poplar BAC Library Populus trichocarpa genomic, genomic survey sequence.
BH860726.1:230-250
AGAGATCTTGCCAGAAAATCCTCTTCTTCT230CATGTAGATGGAAGCACCATAGATGAGTTTGCTAGCGGACTTTTTTGATAG
Populus trichocarpa clone Pop1-41G18, complete sequence.
AC149575.1:964-984
AGAGATCTTGCCAGAAAATCCTCTTCTTCT964CATGTAGATGGAAGCACCATAGATGAGTTTGCTAGCAAACTTTTTTGATAG
Populus trichocarpa clone Pop1-41G18, complete sequence.
AC149575.1:19660-19680
AGAGATCTTGCCAGAAAATCCTCTTCTTCT19660CATGTAGATGGAAGCACCATAGATGAGTTTGCTAGCAAACTTTTTTGATAG
Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:13794-13814
AGAGATCTTGCCAGAAAATCCTCTTCTTCT13794CATGTAGATGGAAGCACCATAGATGAGTTTGCTAGCAAACTTTTTTGATAG
Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:30381-30401
AGAGATCTTGCTAGAAAATCCTCTTCTTCT30381CATGTAGATGGAAGCACCATAGATGAGTTTGCGGGCAAGATATCCTGAAAG
Populus trichocarpa clone ACSB2333-H21, complete sequence.
AC213917.1:32880-32900
AGAGATCTTGCCAGAAAATCCTCTTCTTCT32880CATGTAGATGGAAGCACCATAGATGAGTTTGCTAGCAAACTTTTTTGATAG
Populus nigra genome assembly, chromosome: 7.
OX637678.1:21869218-21869238
CTATCAAAAAAGTTTGCTAGCAAACTCATC21869218TATGGTGCTTCCATCTACATGAGAAGAAGAGGATTTTCTGGCAAGATCTCT
Populus nigra genome assembly, chromosome: 7.
OX637678.1:21891041-21891061
CTATCAAAAAAGTTTGCTAGCAAACTCATC21891041TATGGTGCTTCCATCTACATGAGAAGAAGAGGATTTTCTGGCAAGATCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGTAGATGGAAGCACCATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGTAGATGGAAGCACCATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=CATGTAGATGGAAGCACCATA&k=0&no_gap=0&offset=0&limit=50
0.114 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TATGGTGCTTCCATCTACATG&k=0&no_gap=0&offset=0&limit=44
0.115 | 0.001 | cgi_end;

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