GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 20:03:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Zelleria hepariella genome assembly, chromosome: 4.
OX439382.1:11667385-11667404

TTCTTATCGCGCGCGGATTATACTAATCAT11667385CATGTATTCTGCGTGAAGTGCTTAGCTTATTATTGTATTGTATTGTCATA

Ennomos erosarius genome assembly, chromosome: 22.
OY756999.1:4819653-4819672

TCGCGCCTACTTGGTACTTGCGTTGCGATA4819653CATGTATTCTGCGTGAAGTGAAGGCCTACGTAGCGACCCAGACGCCAATG

39RDBRT_UP_048_F07_22JUL2004_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272976.1:243-262

GAGAGACATGGCTGGTCCTGCTGGGGGTGG243CACTTCACGCAGAATACATGCTCAGCATATTCGACATTTACTTCAAAACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.108 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=CATGTATTCTGCGTGAAGTG&k=0&no_gap=0&offset=0&limit=50
0.181 | 0.072 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTCACGCAGAATACATG&k=0&no_gap=0&offset=0&limit=48
0.181 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).