GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 05:06:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:122590807-122590826
AAAAATATTTTTCAGGAATAAATATTTGGT122590807CATGTGAGCCTTTCTGTTCAAGAGTAATGATCTACAATGGGTACCTATTC
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:129545358-129545377
AAAAATATTTTTCAGGAATAAATATTTGGT129545358CATGTGAGCCTTTCTGTTCAAGAGTAATGATCTACAATGGGTACCTATTC
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141166.1:72356159-72356178
AGGGAATATCTCAGAAAATAGCATAGACCT72356159CATGTGAGCCTTTCTGTTCACTGTCTGAGGCCTTGAAATCGCCAAACGTG
Erpetoichthys calabaricus genome assembly, chromosome: 13.
LR536444.2:59325923-59325942
AAATTCTATAATAATTCACAGCTTGGATTC59325923TGAACAGAAAGGCTCACATGCCTGTAGGTCATTCCCCACATAAGGACTGA
Gobio gobio genome assembly, chromosome: 16.
OX442389.1:30945328-30945347
AGTGTGGAGTTTATAAAACACTATGAAGCC30945328TGAACAGAAAGGCTCACATGAAAAAGAATGTGTGACGAGGAAAAATTACG
Gobius niger genome assembly, chromosome: 4.
OX637598.1:16825090-16825109
TGGAATTAACACCCAGATACAGGAGGCCCA16825090TGAACAGAAAGGCTCACATGGTCTAGGAATCAAACCCAGGATGTTCTTGC
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:31727729-31727748
GAATATGTATCCATTGCAGATTATTACTCT31727729TGAACAGAAAGGCTCACATGACCAAATATTTATTCCTGAAAAATATTTTT
Arachis hypogaea cultivar Shitouqi chromosome A06.
CP030988.1:96934879-96934898
GAATAGATACCCATTGCAGATCATTACTCT96934879TGAACAGAAAGGCTCACATGACCAAATATTTATTCCTGAAAAATATTTTT
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:13618794-13618813
GAATAGGTACCCATTGCAGATCATTACTCT13618794TGAACAGAAAGGCTCACATGACCAAATATTTACCTGAAAATATTTTTTAG
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:14369776-14369795
GAATAGGTACCCATTGCAGATCATTACTCT14369776TGAACAGAAAGGCTCACATGACCAATATTTACCTGAAAATATTTTTTAGA
Ostrea edulis genome assembly, chromosome: 9.
OX387712.1:38098423-38098442
TCACATGAGAGATGGACGACATACCGATCT38098423TGAACAGAAAGGCTCACATGTACCTTTGGCTCAGGTGAGCTAAAACATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATGTGAGCCTTTCTGTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGTGAGCCTTTCTGTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=CATGTGAGCCTTTCTGTTCA&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=TGAACAGAAAGGCTCACATG&k=0&no_gap=0&offset=0&limit=47
0.168 | 0.005 | cgi_end;

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