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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2943.
FX740111.1:865-884
AAAAGCAATGTTTTCTTCACTGTTCTTCAA865CATTACCCCCACTGTATCCGCTTGATCCATCTGGCAGCTATTTGTTCTTG
Brassica oleracea var. viridis mRNA, clone: KALE-071O09, 5' end sequence.
DK483037.1:529-548
CAAGAACAAATAGCTGCCAGATGGATCAAG529CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATAACTATT
RS1CM40TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889901.1:552-571
CAAGAACAAATAGCTGCCAGATGGATCAAG552CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
RR2EP88TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD540809.1:456-475
CAAGAACAAATAGCTGCCAGATGGATCAAG456CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
RR2FW40TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD969862.1:421-440
CAAGAACAAATAGCTGCCAGATGGATCAAG421CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus mRNA, clone: RSCL03L08, 5' end sequence.
FY434088.1:507-526
CAAGAACAAATAGCTGCCAGATGGATCAAG507CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus mRNA, clone: RSCL04M20, 5' end sequence.
FY434459.1:389-408
CAAGAACAAATAGCTGCCAGATGGATCAAG389CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus mRNA, clone: RSCL09L21, 5' end sequence.
FY436103.1:505-524
CAAGAACAAATAGCTGCCAGATGGATCAAG505CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus mRNA, clone: RSCS05F05, 5' end sequence.
FY447673.1:396-415
CAAGAACAAATAGCTGCCAGATGGATCAAG396CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2307.
FX664386.1:650-669
CAAGAACAAATAGCTGCCAGATGGATCAAG650CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
TSA: Raphanus sativus RS00549 mRNA sequence.
JT785096.1:490-509
CAAGAACAAATAGCTGCCAGATGGATCAAG490CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
TSA: Raphanus sativus RS00551 mRNA sequence.
JT785098.1:490-509
CAAGAACAAATAGCTGCCAGATGGATCAAG490CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
TSA: Raphanus sativus RS00556 mRNA sequence.
JT785103.1:490-509
CAAGAACAAATAGCTGCCAGATGGATCAAG490CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:22936630-22936649
CAAGAACAAATAGCTGCCAGATGGATCAAG22936630CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:22936630-22936649
CAAGAACAAATAGCTGCCAGATGGATCAAG22936630CGGATACAGTGGGGGTAATGTTGAAGAACAGTGAAGAAAACATTGCTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATTACCCCCACTGTATCCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTACCCCCACTGTATCCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=CATTACCCCCACTGTATCCG&k=0&no_gap=0&offset=0&limit=50
1.287 | 1.107 | search_minus_done; http://172.18.8.135:50400/match?q=CGGATACAGTGGGGGTAATG&k=0&no_gap=0&offset=0&limit=49
1.297 | 0.010 | cgi_end;

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