GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 15:33:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gobius niger genome assembly, chromosome: 15.
OX637609.1:28750904-28750923
GAGCACGACACGGACAGCGGCATTCGGGAA28750904CATTCAGCCACAACAACAGGAGGAGGAGGGTCAAGTGCAGGGTCAAAACC
Trifolium pratense cDNA clone:RCE32035.
BB923810.1:304-323
TGTTGAACACCAAAACCTTTCTCAGCCAAT304CATTCAGCCACAACAACAGGACAATTTCTTTTCGAGTCAAGGAATGCAAG
Trifolium repens mRNA, clone: WCC01b11_066, unspecified EST.
FY454691.1:608-627
TGTCGAACACCAAAACCTTTCTCAGCCGAT608CATTCAGCCACAACAACAGGAGAATTTCTTTACGAGTCAAGGAATGCCGA
Trifolium repens mRNA, clone: WCC07a01_001, unspecified EST.
FY456414.1:285-304
TGTCGAACACCAAAACCTTTCTCAGCCGAT285CATTCAGCCACAACAACAGGAGAATTTCTTTACGAGTCAAGGCATGCCGA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-257I15.
CU639426.2:101162-101181
GAACTTCAACATGGGACTCTGAACAGACAC101162CATTCAGCCACAACAACAGGGTTGGGGCAGATGCACTCACCAGGCGTCCA
Methylomonas paludis strain S2AM chromosome, complete genome.
CP073754.1:3519831-3519850
CGATTTGCAGGAATGCTTCATAGCCATAAT3519831CATTCAGCCACAACAACAGGGCATTAATTACCACATAGGCCGGCAATAGT
Sus scrofa scrofa breed NS chromosome 12.
CP071563.1:13874412-13874431
TGGACGCCTGGTGAGTGCATCTGCCCCAAC13874412CCTGTTGTTGTGGCTGAATGGTGTCTGTTCAGAGTCCCATGTTGAAGTTC
Sus scrofa genome assembly, chromosome: 12.
OY997219.1:13440041-13440060
TGGACGCCTGGTGAGTGCATCTGCCCCAAC13440041CCTGTTGTTGTGGCTGAATGGTGTCTGTTCAGAGTCCCATGTTGAAGTCC
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:53629574-53629593
TCGGCATGCCTTGACTCGTAAAGAAATTCT53629574CCTGTTGTTGTGGCTGAATGATCGGCTGAGAAAGGTTTTGGTGTTCGACA
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:54215273-54215292
TCGGCATTCCTTGACTCGTAAAGAAATTCT54215273CCTGTTGTTGTGGCTGAATGATCGGCTGAGAAAGGTTTTGGTGTTCGACA
Trifolium subterraneum genome assembly, chromosome: 7.
OX637467.1:49936321-49936340
GACTCATTCCTTGACTCGAGAAGAAATTCT49936321CCTGTTGTTGTGGCTGAATGATGGGTTGAGAAAGGTTTTGGTGTTCAACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATTCAGCCACAACAACAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTCAGCCACAACAACAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=CATTCAGCCACAACAACAGG&k=0&no_gap=0&offset=0&limit=50
0.294 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGTTGTTGTGGCTGAATG&k=0&no_gap=0&offset=0&limit=44
0.298 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).