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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 10:10:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Eutrigla gurnardus genome assembly, chromosome: 15.
OY741278.1:16251668-16251687
AATCATTCGTCTTAGCTTTGTTATTACCCA16251668CATTCCTGAAGACTCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTAA
Sequence 49404 from Patent WO2008034648.
FB830131.1:792-811
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA792CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
Sequence 61731 from Patent WO2008034648.
FB842458.1:792-811
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA792CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
Sequence 49404 from Patent EP2090662.
HB700190.1:792-811
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA792CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
Sequence 61731 from Patent EP2090662.
HB712517.1:792-811
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA792CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
Sequence 174993 from Patent EP2090662.
HB825779.1:792-811
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA792CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
BN25.063F18F020118 BN25 Brassica napus cDNA clone BN25063F18, mRNA sequence.
CD826284.1:324-343
ACGTCAGTTATTGTCTAGTGGCGTTTCAGA324CATTCCTGAAGACTCGGTGTTCACAAGTGTGGACCAGTTCTTGGAGCCGC
0089496 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV192015.1:250-269
ACGTCAGTTATTGTCTAGTGGCGTTTCAGA250CATTCCTGAAGACTCGGTGTTCACAAGTGTGGACCAGTTCTTGGAGCCGC
BR003107 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-016D11 5', mRNA sequence.
EX018463.1:536-555
GCGCCAGCTCTTGTCAAGTGGAGTCTCAGA536CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
BR006711 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-067B11 5', mRNA sequence.
EX022067.1:57-76
GCGCCAGCTCTTGTCAAGTGGAGTCTCAGA57CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
BR021794 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-020B03 5', mRNA sequence.
EX037150.1:194-213
GCGCCAGCTCTTGTCAAGTGGAGTCTCAGA194CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
BR043876 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-055F05 5', mRNA sequence.
EX059232.1:24-43
CTCTTGTCAAGTGGAGTCTCAGA24CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
BR046637 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-105D06 5', mRNA sequence.
EX061993.1:428-447
GCGCCAGCTCTTGTCAAGTGGAGTCTCAGA428CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_2286.
FX662704.1:294-313
GCGTCAGCTCTTGTCTAGCGGAGTCTCAGA294CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6357.
FX692387.1:1580-1599
GCGCCAGCTCTTGTCAAGTGGAGTCTCAGA1580CATTCCTGAAGACTCGGTGTTCACTAGTGTGGACCAGTTCTTGGAGCCGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_5297.
FX726336.1:1583-1602
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA1583CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2696.
FX728993.1:288-307
GCGTCAGCTTTTATCCAGTGGAGTTTCAGA288CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
TSA: Raphanus sativus RS02046 mRNA sequence.
JT786593.1:1248-1267
GCGTCAGCTCTTGTCTAGCGGAGTCTCAGA1248CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
TSA: Raphanus sativus RS02047 mRNA sequence.
JT786594.1:1240-1259
GCGTCAGCTCTTGTCTAGCGGAGTCTCAGA1240CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
TSA: Raphanus sativus RS02050 mRNA sequence.
JT786597.1:1222-1241
GCGTCAGCTCTTGTCTAGCGGAGTCTCAGA1222CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
BONAQ19TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONAQ19, genomic survey sequence.
BZ427936.1:170-189
GCGTCAGCTCTTGTCAAGCGGAGTCTCAGA170CATTCCTGAAGACTCGGTGTTCACAAGTGTCGACCAGTTCTTGGAGCCGC
Brassica napus phosphoenolpyruvate carboxylase mRNA, partial cds.
DQ093826.1:791-810
ACGCCAGTTATTGTCTAGTGGCGTTTCAGA791CATTCCTGAAGACTCGGTGTTCACTAGTGTAGACCAGTTCTTGGAGCCGC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:8697357-8697376
GCGTCAGCTTTTATCCAGTGGAGTTTCAGA8697357CATTCCTGAAGACTCGGTGTTCACTAGCATAGACCAGTTCTTGGAGCCGC
Galleria mellonella genome assembly, chromosome: 1.
OY292283.1:3201164-3201183
GTTTCGTCCATGATATCCCCCATGTTTTGC3201164CATTCCTGAAGACTCGGTGTTATTCCTCTGTACTCTGTAAATTCACTGCC
BOHQU95TF BOHQ Brassica oleracea genomic clone BOHQU95, genomic survey sequence.
BH510204.1:127-146
GCGGCTCCAAGAACTGGTCGACACTTGTGA127ACACCGAGTCTTCAGGAATGTCTGAGACTCCGCTTGACAAGAGCTGACGC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:26891944-26891963
GCGGCTCCAAGAACTGGTCTACACTAGTGA26891944ACACCGAGTCTTCAGGAATGTCTGAAACGCCACTAGACAATAACTGGCGT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:21484046-21484065
CAAGAACACACACCTGGTCCACACTTGTGA21484046ACACCGAGTCTTCAGGAATGTCTGAAACGCCACTAGACAATAACTGACGT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:63643956-63643975
GCGGCTCCAAGAACTGGTCGACACTTGTGA63643956ACACCGAGTCTTCAGGAATGTCTGAGACTCCGCTTGACAAGAGCTGACGC
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:44953144-44953163
GCGGCTCCAAGAACTGGTCTATGCTAGTGA44953144ACACCGAGTCTTCAGGAATGTCTGAAACTCCACTGGATAAAAGCTGACGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATTCCTGAAGACTCGGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTCCTGAAGACTCGGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.670 | 0.661 | search_plus_done; http://172.18.8.135:50400/match?q=CATTCCTGAAGACTCGGTGT&k=0&no_gap=0&offset=0&limit=50
0.721 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=ACACCGAGTCTTCAGGAATG&k=0&no_gap=0&offset=0&limit=26
0.724 | 0.003 | cgi_end;

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