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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:25:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Thellungiella halophila cDNA clone: RTFL01-49-L21, 5'end sequence.
BY833369.1:388-407
ACAGGTTTTGTCTCTTTCCTCTAATGGCTT388CATTGGTCAAGTTCCTTCCTCATTTAGCATCCTAACCAAGTTAGCCAAGT
Brassica oleracea var. viridis mRNA, clone: KALE-055A14, 5' end sequence.
DK476581.1:398-417
AGAGGTTTTGTCTCTTTCCTCTAATGGCTT398CATTGGTCAAGTTCCTTCCTCATTTAGTAACTTAATCCATCTCACCCATT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080O07, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189477.2:124883-124902
AGAGGTTTTGTCTCTTTCCTTTAATGGCTT124883CATTGGTCAAGTTCCTTCCTCTATTAGTAACCTAATCCATCTTACCCATT
Brassica napus putative leucine-rich repeat disease resistance protein-like mRNA, complete sequence.
AY919864.1:220-239
AGAGGTTTTGTCTCTTTCCTTTAATGGCTT220CATTGGTCAAGTTCCTTCCTCTATTAGTAACCTAATCCATCTTACCCATT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:68437738-68437757
AGAGGTTTTGTCTCTTTCCTTTAATGGCTT68437738CATTGGTCAAGTTCCTTCCTCTATTAGTAACCTAATCCATCTTACCCATT
Arabis alpina genome assembly, chromosome: 6.
LT669793.1:2869360-2869379
AGAGGTCTTGTCTCTTTCCTCTAATGGTTT2869360CATTGGTCAAGTTCCTTCCTCTTTTAGTAACCTAACCTTCTTGACTCATT
Arabis alpina genome assembly, chromosome: 6.
LT669793.1:3297657-3297676
AGAGGTCTTGCCTCTTTCGTCTAATGGGTT3297657CATTGGTCAAGTTCCTTCCTCGTTTAGTAACCTAACCAAGTTAAACCAGT
Arabis alpina genome assembly, chromosome: 6.
LT669793.1:11068341-11068360
AGAGATCTTGGCTCTTTCCTATAACGGCTT11068341CATTGGTCAAGTTCCTTCCTCATTTAATAGCCTAAAACGGCTAACCAAGT
Thlaspi arvense genome assembly, chromosome: 3.
OU466859.2:353446-353465
AGAGGTTTTGTCTCTTTCCTCTAATGGTTT353446CATTGGTCAAGTTCCTTCCTCATTTGGTAATCTAAGCCAGCTTTCCGATT
Cardamine flexuosa genome assembly, chromosome: 4.
OY743217.1:6712336-6712355
ACAGTATTTATCTCTTTACTCTAATGGTTT6712336CATTGGTCAAGTTCCTTCCTCATTTAGTAACCTAAGTCTCCTTTCCATTT
Barbarea vulgaris genome assembly, chromosome: 6.
OY763892.1:6770280-6770299
AGAGGTTTTATCTCTTTCCTTTAATGGTTT6770280CATTGGTCAAGTTCCTTCCTCATTTAGTAACCTAACTTCGTTAACTGAGT
BOHXF27TR BO_2_3_KB Brassica oleracea genomic clone BOHXF27, genomic survey sequence.
BH684168.1:39-58
AATGGGTAAGATGGATTAGGTTACTAATAG39AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
BOIES23TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIES23, genomic survey sequence.
CC960297.1:607-626
AATGGGTAAGATGGATTAGGTTACTAATAG607AGGAAGGAACTTGACCAATGAAGCCATTAAA
KBrH064C04R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH064C04, genomic survey sequence.
DU978857.1:482-501
AATGGGTAAGATGGATTAGGTTACTAATAG482AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
BOT01-23H18TR BOT01 Brassica oleracea genomic clone BOT01-23H18, genomic survey sequence.
FI689033.1:381-400
AATGGGTGAGATGGATTAAGTTACTAAATG381AGGAAGGAACTTGACCAATGAAGCCATTAGAGGAAAGAGACAAAACCTCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082C18, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC232525.1:73778-73797
AATGGGTAAGATGGATTAGGTTACTAATAG73778AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:8011016-8011035
AATGGGTAAGATGGATTAGGTTACTAATAG8011016AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:13011986-13012005
AATGGGTGAGATGGATTAAGTTACTAAATG13011986AGGAAGGAACTTGACCAATGAAGCCATTAGAGGAAAGAGACAAAACCTCT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:8030383-8030402
AATGGGTAAGATGGATTAGGTTACTAATAG8030383AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:10838903-10838922
AATGGGTAAGATGGATTAGGTTACTAATAG10838903AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica napus genome assembly, chromosome: C04.
HG994368.1:12783256-12783275
AATGGGTGAGATGGATTAAGTTACTAAATG12783256AGGAAGGAACTTGACCAATGAAGCCATTAGAGGAAAGAGACAAAACCTCT
Brassica rapa genome, scaffold: A03.
LR031572.1:8057761-8057780
AATGGGTAAGATGGATTAGGTTACTAATAG8057761AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:10819087-10819106
AATGGGTAAGATGGATTAGGTTACTAATAG10819087AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:12374703-12374722
AATGGGTGAGATGGATTAAGTTACTAAATG12374703AGGAAGGAACTTGACCAATGAAGCCATTAGAGGAAAGAGACAAAACCTCT
Arabidopsis arenosa genome assembly, chromosome: 4.
LR999454.1:10685279-10685298
AATAGGAAAGCTGGCTTAGGTTACTAAATG10685279AGGAAGGAACTTGACCAATGAAACCATTAGAGGAAAGAGATAAAACCTCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:8151895-8151914
AATGGGTAAGATGGATTAGGTTACTAATAG8151895AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAGACAAAACCTCT
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:7267990-7268009
AATCGGAAAGCTGGCTTAGATTACCAAATG7267990AGGAAGGAACTTGACCAATGAAACCATTAGAGGAAAGAGACAAAACCTTT
Thlaspi arvense genome assembly, chromosome: 3.
OU466859.2:41456791-41456810
AATCGGAAAGCTGGCTTAGATTACCAAATG41456791AGGAAGGAACTTGACCAATGAAACCATTAGAGGAAAGAGACAAAACCTCT
Cardamine flexuosa genome assembly, chromosome: 4.
OY743217.1:6947974-6947993
AATAGGAAATCAGGCTTAGGTTACTAAATG6947974AGGAAGGAACTTGACCAATGAAGCCATTAAAGGAAAGAAATAAAACTTGT
Cardamine chenopodiifolia genome assembly, chromosome: 28.
OZ000486.1:13518237-13518256
AATAGGAAATCAAGCTTAGGTTACTAAATG13518237AGGAAGGAACTTGACCAATGAAACCATTTGAGGAAAGAGTTAAAACCTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATTGGTCAAGTTCCTTCCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTGGTCAAGTTCCTTCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.224 | 0.215 | search_plus_done; http://172.18.8.135:50400/match?q=CATTGGTCAAGTTCCTTCCT&k=0&no_gap=0&offset=0&limit=50
0.418 | 0.194 | search_minus_done; http://172.18.8.135:50400/match?q=AGGAAGGAACTTGACCAATG&k=0&no_gap=0&offset=0&limit=39
0.430 | 0.012 | cgi_end;

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