GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 14:38:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOT01-37J2TF BOT01 Brassica oleracea genomic clone BOT01-37J2, genomic survey sequence.
FI700687.1:386-406
GTTGTAAGTAAGCTTTGATTTTTGTATATA386CATTGGTTGGTGAATTGACAGTTATAATGTTCTATTGTATCAGTCGATGGA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:14176861-14176881
ATTGTACGAAAGCTTTGATTTTTGTATATA14176861CATTGGTTGGTGAATTGACAGTTATACTGTTCTATTGAATCAATCGATGGA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:12729547-12729567
ATTGTACGAAAGCTTTGATTTTTGTATATA12729547CATTGGTTGGTGAATTGACAGTTATACTGTTCTATTGAATCAATCGATGGA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:50769056-50769076
GTTGTAAGTAAGCTTTGATTTTTGTATATA50769056CATTGGTTGGTGAATTGACAGTTATAATGTTCTATTGTATCAGTCGAATGA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:51150798-51150818
GTTGTAAGTAAGCTTTGATTTTTGTATATA51150798CATTGGTTGGTGAATTGACAGTTATAATGTTCTATTGTATCAGTCGAATGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:23801815-23801835
TCATTCGACTGATACAATAGAACATTATAA23801815CTGTCAATTCACCAACCAATGTATATACAAAAATCAAAGCTTACTTACAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CATTGGTTGGTGAATTGACAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTGGTTGGTGAATTGACAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.152 | 0.143 | search_plus_done; http://172.18.8.135:50400/match?q=CATTGGTTGGTGAATTGACAG&k=0&no_gap=0&offset=0&limit=50
0.171 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTCAATTCACCAACCAATG&k=0&no_gap=0&offset=0&limit=45
0.172 | 0.001 | cgi_end;

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