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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:2297330-2297349
GAGAATGACAAGATTAGCACTTGAAACAAG2297330CCAAAACAGAGGATTGAAAGAAAGAAGGAGACAGAGAGTTAAAGTGATAC
Draba incana genome assembly, chromosome: 15.
OY755216.1:29812711-29812730
ATCCTATGAAACAGAGACGAAAACAGAGGA29812711CCAAAACAGAGGATTGAAAGAGTAAATAAACCGGAACTGATTTTTGTAAG
37RDBRH_UP_048_B01_10JUL2004_013 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE525904.1:70-89
GTATCACTTTAACTCTCTGTCTCCTTCTTT70CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
BR040494 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-010A03 5', mRNA sequence.
EX055850.1:147-166
GTATCACTTTAACTCTCTGTCTCCTTCTTT147CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_19096.
FX693419.1:78-97
GTATCACTTTAACTCTCTGTCTCCTTCTTT78CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_41269.
FX733083.1:76-95
GTATCACTTTAACTCTCTGTCTCTTTCTTT76CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:30012882-30012901
GTATCACTTTAACTCTCTGTCTCCTTCTTT30012882CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:30037830-30037849
GTATCACTTTAACTCTCTGTCTCCTTCTTT30037830CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:53353852-53353871
GTATCACTTTAACTCTCTGTCTCCTTCTTT53353852CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica rapa genome, scaffold: A03.
LR031572.1:29828377-29828396
GTATCACTTTAACTCTCTGTCTCCTTCTTT29828377CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:55998323-55998342
GTATCACTTTAACTCTCTGTCTCCTTCTTT55998323CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:29889741-29889760
GTATCACTTTAACTCTCTGTCTCCTTCTTT29889741CTTTCAATCCTCTGTTTTGGCTTGTTTCAAGTGCTAATCTTGTCATTCTC
Draba incana genome assembly, chromosome: 16.
OY755217.1:5190047-5190066
TTACAAAAAATCAGTTCCGGTTTATTTACT5190047CTTTCAATCCTCTGTTTTGGTCCTCTGTTTTCGTCTCTGTTTTATAGGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAAACAGAGGATTGAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAAACAGAGGATTGAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.162 | 0.153 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAAACAGAGGATTGAAAG&k=0&no_gap=0&offset=0&limit=50
0.399 | 0.237 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTCAATCCTCTGTTTTGG&k=0&no_gap=0&offset=0&limit=48
0.406 | 0.007 | cgi_end;

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