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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_12307.
FX663735.1:425-444
CACTAATTTGTTCACCTTTCCCTGATTCTT425CCAAAAGATTTGAAGCAGCCACAAAGGCTTTCTCAAGTTCACTCCTCTCA
TSA: Sedum alfredii, clone Sa_Contig38430.
HE755535.1:216-235
AGTAGCTGCTGCTCATGCATCCATCCAGAG216CCAAAAGATTTGAAGCAGCCAGACATATAGTAAAGAAAACTACTCGATTT
TSA: Raphanus sativus RS28322 mRNA sequence.
JT812869.1:522-541
CACTAATTTGTTCACCTTTCCCTGATTCTT522CCAAAAGATTTGAAGCAGCCACAAAGGCTTTCTCAAGTTCACTCCTCTCA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:37521897-37521916
CACTAATTTGTTCACCTTTCCCTGATTCTT37521897CCAAAAGATTTGAAGCAGCCACAAAGGCTTTCTCAAGTTCACTCCTCTCA
Alisma plantago-aquatica genome assembly, chromosome: 5.
OY856413.1:297012161-297012180
TTGCTACAATATTTTTGAAAATGTTGACAT297012161CCAAAAGATTTGAAGCAGCCCAATGATGGGAGATCCAACAAACCCATCTA
Cardamine chenopodiifolia genome assembly, chromosome: 15.
OZ000473.1:11779798-11779817
TAATTTCTTCCGCTTTCCCGGATTCATCCG11779798CCAAAAGATTTGAAGCAGCCGCAAAAGCTTTTTCCAGTTCACTCCTCTCA
Raphanus sativus mRNA, clone: RSCS03O24, 5' end sequence.
FY447210.1:595-614
TGAGAGGAGTGAACTTGAGAAAGCCTTTGT595GGCTGCTTCAAATCTTTTGGAAGAATCAGGGAAAGGTGAACAAATTAGTG
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:6096239-6096258
TGAGAGGAGTGAACTTGAGAAAGCCTTTGT6096239GGCTGCTTCAAATCTTTTGGAAGAATCAGGGAAAGGTGAACAAATTAGTG
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:6146992-6147011
TGAGAGGAGTGAACTGGAGAAAGCCTTTAC6146992GGCTGCTTCAAATCTTTTGGCGGATGAATCCGGGAAAGCGGAAGAGATTA
Cardamine chenopodiifolia genome assembly, chromosome: 23.
OZ000481.1:5327270-5327289
TGAGAGGAGTGAATTGGAGATGGCCTTTGT5327270GGCTGCTTCAAATCTTTTGGCAGATGAATCCGGGAAAGTGGAAGAAATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAAAGATTTGAAGCAGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAAAGATTTGAAGCAGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.371 | 0.363 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAAAGATTTGAAGCAGCC&k=0&no_gap=0&offset=0&limit=50
0.693 | 0.322 | search_minus_done; http://172.18.8.135:50400/match?q=GGCTGCTTCAAATCTTTTGG&k=0&no_gap=0&offset=0&limit=44
0.696 | 0.003 | cgi_end;

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