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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:21:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Eb0035A19.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0035A19 5', mRNA sequence.
CO105072.1:647-666
TTCAATTAGCATGCAGAGGCCTTGCTGCGC647CCAAAAGCACTCGCAATTTTAAAGTTTATTAAACCATGCCCAATTAGAAA
Gossypium raimondii isolate D5-4 chromosome D5_07.
CP032559.1:7717737-7717756
TTCAATTAGCATGCAGAGGCCTTGCTGCGC7717737CCAAAAGCACTCGCAATTTTAAAGTTTATTAAACCATGCCCAATTAGAAA
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:10701402-10701421
TTCAATTAGTATGCAGAGGCCTTGCTGCGC10701402CCAAAAGCACTCGCAATTTTAAAGTTTATTAAACCATGCCCAATAAGAAA
Gossypium rotundifolium isolate GPK201 chromosome 7.
CP106728.1:14259572-14259591
TTCAATTAGTATGCAGAGGCCTTGCTGCGC14259572CCAAAAGCACTCGCAATTTTAAAGTTTATTAAACCATGCCCAATTAGAAA
Limnephilus rhombicus genome assembly, chromosome: 18.
OV815288.1:22476791-22476810
CAAAGTAATCAGGGACGTGCAGGGTCACTG22476791CCAAAAGCACTCGCAATTTTGAAGAAATTAAATGGCGGCTGGCTGCTTAC
A10_P-13_070 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX165352.1:254-273
TTTCTAATTGGGCATGGTTTAATAAACTTT254AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA
A10_P-13_070 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY196992.1:254-273
TTTCTAATTGGGCATGGTTTAATAAACTTT254AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA
EST009676 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 43-K21 5', mRNA sequence.
GR716476.1:182-201
TTTCTAATTGGGCATGGTTTAATAAACTTT182AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA
E10-061E10 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798661.1:273-292
TTTCTAATTGGGCATGGTTTAATAAACTTT273AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA
Gossypioides kirkii chromosome KI_07.
CP032249.1:31814054-31814073
TTTCTAACTGGGCATGGTTTAATAAACTTT31814054AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA
Gossypium turneri isolate D10-2 chromosome D10_07.
CP032577.1:46134536-46134555
TTTCTAATTGGGCATGGTTTAATAAACTTT46134536AAAATTGCGAGTGCTTTTGGGCGCAGCAAGGCCTCTGCATACTAATTGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAAAGCACTCGCAATTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAAAGCACTCGCAATTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAAAGCACTCGCAATTTT&k=0&no_gap=0&offset=0&limit=50
0.614 | 0.433 | search_minus_done; http://172.18.8.135:50400/match?q=AAAATTGCGAGTGCTTTTGG&k=0&no_gap=0&offset=0&limit=45
0.618 | 0.004 | cgi_end;

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