GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 09:09:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus vulgaris genome assembly, chromosome: 4.
LR738614.1:14371297-14371316
GTGTTTTAGAAAAAACATAGCTAGTTCATA14371297CCAAAATTCAATTCCCCATGTGTTCTACCTTGAGATAATCATTGTATTCT
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:102386450-102386469
ACGGTTCGGTGACGTCCACTTCATCAAAAC102386450CCAAAATTCAATTCCCCATGATATGCCTATGGCCAAAAAAATGATAGAAG
Gossypium hirsutum clone NBRI_GE53791 microsatellite sequence.
JX611589.1:5-24
AAAC5CCAAAATTCAATTCCCCATGATATGCCTATGGCCAAAAAAATGATAGAAG
Solanum torvum mRNA, clone: TVR09E11, 5'end, expressed in root at vegetative stage, 2 months after germination.
FS109712.1:466-485
ATGGAGAGAAGAAGCCTTTCTTCGTCCATT466CATGGGGAATTGAATTTTGGAAAAATTTTACCCGCGGCAAAGATATAATT
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:21165456-21165475
CTTCTATCATTTTTTTGGCCATAGGCATAT21165456CATGGGGAATTGAATTTTGGGTTTTGATGAAGTGGACGTCACCGAACCGT
Hibiscus tridactylites genome assembly, chromosome: 19.
OY288283.1:8837245-8837264
GGCCTAGGGTAAGACCTTCTGTATGCAGTT8837245CATGGGGAATTGAATTTTGGTGTTCGGTTTGAGGGTAGTTACCAGTAAAC
Samia ricini White DNA, chromosome 03, sequence.
AP028159.1:4038666-4038685
AGGCAAGCTAGTACGAATGGACTTTTTTTA4038666CATGGGGAATTGAATTTTGGCATCCGTCTACCAGTAATAATCCATATTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAAAATTCAATTCCCCATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAAATTCAATTCCCCATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.098 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAAATTCAATTCCCCATG&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=CATGGGGAATTGAATTTTGG&k=0&no_gap=0&offset=0&limit=47
0.205 | 0.003 | cgi_end;

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