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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:29:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Lactuca serriola Serrassy_T_P2_64881 mRNA sequence.
JO020545.1:863-883
CTGCTACTACACCCTCTCAAGCTCCCCAAA863CCAAACACCTTGTGCATTGCTCTTGAAAGCAAGGACTGGCGTCCTATGGGG
TSA: Capsicum annuum MGMT_Contig9757, mRNA sequence.
JW060001.1:829-849
CTCGCAGCTGAAGCTCTCAAACGTGTCAAA829CCAAACACCTTGTGCATTGCTCGCGACAGCAGTGACTGACACCCCGCAGGA
EST312303 tomato root during/after fruit set, Cornell University Solanum lycopersicum cDNA clone cLEX12M3 5', mRNA sequence.
AW621505.1:265-285
TCCTGCAGGGTGTCAGTCACTGCTGTCGCG265AGCAATGCACAAGGTGTTTGGCTTGACACGTCTGAGAGCTTCAGCAGCAAG
EST543747 tomato flower, buds 0-3 mm Solanum lycopersicum cDNA clone cTOA21D23 5' end, mRNA sequence.
BI923858.1:533-553
TCCTGCAGGGTGTCAGTCACTGCTGTCGCG533AGCAATGCACAAGGTGTTTGGCTTGACACGTCTGACAGCTTCATCAGCAAG
QGB19C20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB19C20, mRNA sequence.
BQ852855.1:106-126
CCCCATAGGACGCCAGTCCTTGCTTTCAAG106AGCAATGCACAAGGTGTTTGGTTTGGGGAGCTTGAGAGGGTGTAGTAGCAG
56118.1 After-Cooking Darkening C Solanum tuberosum cDNA clone 56118 5', mRNA sequence.
CV431666.1:459-479
TCCTGCAGGGTGTCAGTCACTGCTGTCACG459AGCAATGCACAAGGTGTTTGGCTTGACACGTCTGAGAGCTTCAGCAGCAAG
56118.2 After-Cooking Darkening C Solanum tuberosum cDNA clone 56118 5', mRNA sequence.
DN941407.1:460-480
TCCTGCAGGGTGTCAGTCACTGCTGTCACG460AGCAATGCACAAGGTGTTTGGCTTGACACGTCTGAGAGCTTCAGCAGCAAG
KP1B.102O19F.050722T7 KP1B Nicotiana tabacum cDNA clone KP1B.102O19, mRNA sequence.
DV160328.1:33-53
TCCTGCGGGGTGTCAGTCGCTGCTGTCACG33AGCAATGCACAAGGTGTTTGGTTTGACACGTTTAAGAGCTTCTACCACCAG
96897.1 Cold Sweetening C Solanum tuberosum cDNA clone 96897 5', mRNA sequence.
DV626436.1:54-74
CCTGCAGGGTTGTCAGTCACTGCTGTCACG54AGCAATGCACAAGGTGTTTGGCTTGACACGTCTGAGAGCTTCAGCAGCAAG
CCIL11897.b1_B24.ab1 CCI(LMS) chicory Cichorium intybus cDNA clone CCIL11897, mRNA sequence.
EH673908.1:475-495
CCCCATAGGACGCCAGTCCCTGCTTTCAAG475AGCAATGCACAAGGTGTTTGGTTCAGGGTCCTTCAAAGGGTCTCCTCCCAC
CCEL5940.b1_H21.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL5940, mRNA sequence.
EL349555.1:660-680
CCCCATAGGACGCCAGTCCCTGCTTTCAAG660AGCAATGCACAAGGTGTTTGGTTCCGGGACCTTCAAAGGCTCTCCTCCCTC
TSA: Lactuca sativa Letassy_X1_41 mRNA sequence.
JI573875.1:4815-4835
CCCCATAGGACGCCAGTCCTTGCTTTCAAG4815AGCAATGCACAAGGTGTTTGGTTTGGGGAGCTTGAGAGGGTGTAGTAGCAG
Aricia agestis genome assembly, chromosome: 19.
LR990275.1:13597509-13597529
GCCAGAGCCCCGTATTTTGGATCTAGAGAT13597509AGCAATGCACAAGGTGTTTGGATAGCACCTGTTGCATTGCTGTAACAAGAT
Aricia artaxerxes genome assembly, chromosome: 20.
OW569307.1:14131421-14131441
GCCAGAGCCCCGTATTTTGGATCTAGAGAT14131421AGCAATGCACAAGGTGTTTGGATAGCACCTGTTGCATTGCTGTAACAAGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAACACCTTGTGCATTGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAACACCTTGTGCATTGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAACACCTTGTGCATTGCT&k=0&no_gap=0&offset=0&limit=50
0.750 | 0.558 | search_minus_done; http://172.18.8.135:50400/match?q=AGCAATGCACAAGGTGTTTGG&k=0&no_gap=0&offset=0&limit=48
0.758 | 0.008 | cgi_end;

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