GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 11:46:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

IC0AAA29BF03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY271447.1:2-24

C2CCAACTGACACTAATCCTCTTCCATATATATCTATTAAAACGATGTCGTCGTC

LT33-C1-003-057-C03-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY881573.1:18-40

CCACGCGTCCGGCTAAC18CCAACTGACACTAATCCTCTTCCATATATATCTATTAAAACGATGTCGTCGTC

LT33-C1-003-082-C08-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY883241.1:6-28

CTAAC6CCAACTGACACTAATCCTCTTCCATATATATCTATTAAAACGATGTCGTCGTC

IC0AAA29BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29BF03, mRNA sequence.
FC913514.1:2-24

C2CCAACTGACACTAATCCTCTTCCATATATATCTATTAAAACGATGTCGTCGTC

Citrus sinensis genome assembly, chromosome: 5.
OY754322.1:1627725-1627747

GACGACGACATCGTTTTAATAGATATATAT1627725GGAAGAGGATTAGTGTCAGTTGGGTTACTGAATGGAATTTGTGTTTAAAATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.377 | 0.368 | search_plus_done; http://172.18.8.135:50400/match?q=CCAACTGACACTAATCCTCTTCC&k=0&no_gap=0&offset=0&limit=50
0.435 | 0.058 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGAGGATTAGTGTCAGTTGG&k=0&no_gap=0&offset=0&limit=46
0.436 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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