GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:17:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Avena insularis genome assembly, chromosome: 1C.
OU342338.1:131026362-131026381
TTTCTGTTTGGGTTGCATATCTAGCCTACC131026362CCAACTTGCTCGGGATAAAAGGCTTGCTTGTTGTTGCTGTATACGTGTAT
Avena eriantha genome assembly, chromosome: 1C.
OU342740.1:161449164-161449183
TTTCTGTTTGGGTTGCATATCTAGCCTACC161449164CCAACTTGCTCGGGATAAAAGGCTTGCTTGTTGTTGCTGTATACGTGTAT
Avena sativa genome assembly, chromosome: 1C.
OU342385.1:169147264-169147283
ATACACTTATACAGCAACAACAAGCAAGCC169147264TTTTATCCCGAGCAAGTTGGGGTAGGCTAGATATGCAACCCAAACAGAAA
Avena sativa genome assembly, chromosome: 8.
OV702286.1:189377392-189377411
ATACACTTATACAGCAACAACAAGCAAGCC189377392TTTTATCCCGAGCAAGTTGGGGTAGGCTAGATATGCAACCCAAACAGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAACTTGCTCGGGATAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAACTTGCTCGGGATAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=CCAACTTGCTCGGGATAAAA&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTATCCCGAGCAAGTTGG&k=0&no_gap=0&offset=0&limit=48
0.119 | 0.001 | cgi_end;

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