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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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0138308 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149075.1:539-560
TTGATCATCGCCTTAGCTGCATGTTTGATG539CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
0138412 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149142.1:541-562
TTGATCATCGCCTTAGCTGCATGTTTGATG541CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
0138524 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149204.1:549-570
TTGATCATCGCCTTAGCTGCATGTTTGATG549CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
0138810 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149345.1:549-570
TTGATCATCGCCTTAGCTGCATGTTTGATG549CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
RR3CK29JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX768699.1:551-572
TTGATCATGGCCTTGGCGGCATGTTTGATG551CCAAGCAAGACACCATTCACATTGACGGAGACAAGTTTGTTAACCATCTTAA
BOHLO53TR BOHL Brassica oleracea genomic clone BOHLO53, genomic survey sequence.
BH445462.1:155-176
TTGATCATCGCCTTAGCTGCATGTTTGATG155CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:35493045-35493066
TTGATCATGGCCTTAGCTGCATGTTTGATG35493045CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:22294117-22294138
TTGATCATGGCCTTAGCTGCATGTTTGATG22294117CCAAGCAAGACACCATTCACATTGACCGAAACAAGTTTGTTTACCATCTTAA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:35925474-35925495
TTGATCATCGCCTTAGCTGCATGTTTGATG35925474CCAAGCAAGACACCATTCACATTGACTGAAACAACTTTGTTTACCATCTTAA
Brassica rapa genome, scaffold: A01.
LR031571.1:27370642-27370663
TTGATCATGGCCTTAGCTGCATGTTTGATG27370642CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:35749802-35749823
TTGATCATCGCCTTAGCTGCATGTTTGATG35749802CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:27897029-27897050
TTGATCATGGCCTTAGCTGCATGTTTGATG27897029CCAAGCAAGACACCATTCACATTGACTGAAACAAGTTTGTTTACCATCTTAA
Brassica oleracea var. italica EST, clone AAFC_WHRI_Zennia005C11_M13orT7orSP6_ForR.
AM394227.1:266-287
TTAAGATGGTAAACAAACTTGTTTCAGTCA266ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
0139317 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149588.1:382-403
TTAAGATGGTAAACAAACTTGTTTCAGTCA382ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
0139477 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149676.1:381-402
TTAAGATGGTAAACAAACTTGTTTCAGTCA381ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
0139834 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149912.1:380-401
TTAAGATGGTAAACAAACTTGTTTCAGTCA380ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
0139919 Brassica napus Early anther Brassica napus cDNA, mRNA sequence.
EV149997.1:382-403
TTAAGATGGTAAACAAACTTGTTTCAGTCA382ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
BR001108 anther cDNA library KBAY Brassica rapa subsp. pekinensis cDNA clone KBAY-18H12 5', mRNA sequence.
EX016464.1:23-44
GTAAACAAACTTGTTTCGGTCA23ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
BR032689 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-026E11 5', mRNA sequence.
EX048045.1:257-278
TTAAGATGGTAAACAAACTTGTTTCGGTCA257ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
BR037198 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-113B05 5', mRNA sequence.
EX052554.1:202-223
TTAAGATGGTAAACAAACTTGTTTCGGTCA202ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
BR038742 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-132E11 5', mRNA sequence.
EX054098.1:335-356
TTAAGATGGTAAACAAACTTGTTTCGGTCA335ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
BR039430 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-141C07 5', mRNA sequence.
EX054786.1:329-350
TTAAGATGGTAAACAAACTTGTTTCGGTCA329ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
BR039805 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-150B01 5', mRNA sequence.
EX055161.1:95-116
TTAAGATGGTAAACAAACTTGTTTCGGTCA95ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCCATGATCAA
RR3CK29TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX764861.1:272-293
TTAAGATGGTTAACAAACTTGTCTCCGTCA272ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCCGCCAAGGCCATGATCAA
RR1EZ57TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD533758.1:354-375
TTAAAATGGTTAACAAACTTGTCTCCGTCA354ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCCGCCAAGGCCATGATCAA
RS2FH22TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570664.1:316-337
TTAAGATGGTTAACAAACTTGTTTCCGTCA316ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCCGCCAGGGCCATGATCAA
RS2GE52TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD946715.1:371-392
TTAAGATGGTTAAAAAACTTGTGTCCGTCA371ATGTGAATGGTGTCTTGCTTGGCATCAAATATGCCGCCAAGGCCATGATCAA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:14540487-14540508
TTAAGATGGTAAACAAAGTTGTTTCAGTCA14540487ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCAGCTAAGGCGATGATCAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:7452010-7452031
TTAAGATGGTTAACAAACTTGTCTCCGTCA7452010ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCCGCCAAGGCCATGATCAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:7452010-7452031
TTAAGATGGTTAACAAACTTGTCTCCGTCA7452010ATGTGAATGGTGTCTTGCTTGGCATCAAACATGCCGCCAAGGCCATGATCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAGCAAGACACCATTCACAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGCAAGACACCATTCACAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.707 | 0.698 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGCAAGACACCATTCACAT&k=0&no_gap=0&offset=0&limit=50
1.590 | 0.884 | search_minus_done; http://172.18.8.135:50400/match?q=ATGTGAATGGTGTCTTGCTTGG&k=0&no_gap=0&offset=0&limit=38
1.602 | 0.012 | cgi_end;

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