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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 16:09:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus cDNA, clone: LjFL3-022-DG11, 5'-end sequence.
FS325785.1:716-734
CTAACATTCTCTTGGATGAGAATATGGTAC716CCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGC
Lotus japonicus cDNA, clone: LjFL3-058-BG07, 5'-end sequence.
FS337205.1:676-694
CTAACATTCTCTTGGATGAGAATATGGTAC676CCAAGCTCTATGATTTCGGGATTTCCTTAC
Lotus japonicus genomic DNA, chromosome 2, clone: LjT47E17, TM1773.
AP009711.1:91766-91784
CTAACATTCTCTTGGATGAGAATATGGTAC91766CCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGC
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:75745543-75745561
CTAACATTCTCTTGGATGAGAATATGGTAC75745543CCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGC
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:75757260-75757278
CTAACATTCTCTTGGATGAGAATATGGTAC75757260CCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGC
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:75784879-75784897
CTAACATTCTCTTGGATGAGAATATGGTAC75784879CCAAGCTCTATGATTTCGGGATTTCCTTACAAGGATCGTTGTTCTCGGC
Rhaphigaster nebulosa genome assembly, chromosome: 6.
OX411312.1:57989071-57989089
GTGTTTACAGTTAAAGGATGTCCAACCGTA57989071CCAAGCTCTATGATTTCGGGAAGAAAATTAAGATCATAGGATCCCACTA
LJMAM51TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA sequence.
GO028334.1:557-575
GCCGAGAACAACGATCCTTGTAAGGAAATC557CCGAAATCATAGAGCTTGGGTACCATATTCTCATCCAAGAGAATGTTAG
Lotus japonicus DNA, clone:LjT47e17_not.
AG259014.1:450-468
GCCGAGAACAACGATCCTTGTAAGGAAATC450CCGAAATCATAGAGCTTGGGTACCATATTCTCATCCAAGAGAATGTTAG
Fraxinus pennsylvanica genome assembly, chromosome: 2.
OU503037.1:1063022-1063040
GGCTGCTATGCTTAGAAAGCCTGGAGTCCA1063022CCGAAATCATAGAGCTTGGGTCCAATCTGACGACTCATCGGTTTCGTGC
Andrena hattorfiana genome assembly, chromosome: 5.
OX122893.2:31421632-31421650
GTCGGCGCTCTCCGCCAAAAATTCATTTCA31421632CCGAAATCATAGAGCTTGGGTCGCAAACAGAAAATCCGAGGTTCACATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAGCTCTATGATTTCGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGCTCTATGATTTCGG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.323 | 0.314 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGCTCTATGATTTCGG&k=0&no_gap=0&offset=0&limit=50
0.516 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=CCGAAATCATAGAGCTTGG&k=0&no_gap=0&offset=0&limit=43
0.519 | 0.003 | cgi_end;

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