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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 12:11:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:25106208-25106228
ATTTATTATAGGCGATGACATTGATGTTAA25106208CCAAGCTGTGATTATAGGAAGAAGTTCACGTATTGTTCAAGAAGAAGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:22535792-22535812
ATTTATTATAGGCGATGACATTGGTGTTAA22535792CCAAGCTGTGATTATAGGAAGAAGGTCACAGTATTGTTCAAAGAAGAAGAA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:18694199-18694219
AATTGAAGCAATCTTGGTCTACAGTGTTAA18694199CCAAGCTGTGATTATAGGAAGAAGTTCACAATATTGTTCTAAGAATATGGA
Pyrus communis genome assembly, chromosome: 4.
OY757071.1:18699136-18699156
TTAGCTATACCAGCGACGATACCATGTTAA18699136CCAAGCTGTGATTATAGGAAGAAGTTCACAGTATTGTTCTAAGAATATGGA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:19774244-19774264
AAAACTAGCTTTCAGTGTTAATTCTGTTAA19774244CCAAGCTGTGATTATAGGAAGAAGTTCACAGTATTGTTCTAAGAATATGAA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:19779151-19779171
TTAGCTATACCAGCGATGATACCATGTTAA19779151CCAAGCTGTGATTATAGGAAGAAGTTCACAGTATTGTTCTAAGAATATGAA
Malus domestica genome assembly, chromosome: 17.
OU745007.1:23187453-23187473
CTTCTTCTTCTTGAACAATACTGTGAACTT23187453CTTCCTATAATCACAGCTTGGTTAACATCAATGTCATCGCCTATAATAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAGCTGTGATTATAGGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGCTGTGATTATAGGAAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.343 | 0.334 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGCTGTGATTATAGGAAG&k=0&no_gap=0&offset=0&limit=50
0.435 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCCTATAATCACAGCTTGG&k=0&no_gap=0&offset=0&limit=44
0.435 | 0.001 | cgi_end;

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